PF00905


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00905, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 42 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00905
Description Penicillin binding protein transpeptidase domain

Occurence in the database

PF00905 is associated with 42 different proteins (see tab "Protein list" and "Profile")
The 42 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_516 FBDBKF_01085 197371 199680 -1 pbpC peptidoglycan glycosyltransferase PbpC Morganella morganii S1
1 group_863 FBDBKF_04365 63049 64842 -1 ftsI Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) Morganella morganii S1
2 group_1312 FBDBKF_08035 140599 143106 1 mrcB bifunctional glycosyl transferase/transpeptidase Morganella morganii S1
3 group_1556 FBDBKF_10080 107484 109415 1 mrdA peptidoglycan DD-transpeptidase MrdA Morganella morganii S1
4 group_1593 FBDBKF_10385 32392 34845 -1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Morganella morganii S1
5 group_3577 FBDBKF_19315 15087 17447 1 pbpC penicillin-binding protein 1C Morganella morganii S1
6 group_3793 FBDBKF_20580 706 1536 -1 blaOXA-1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 Morganella morganii S1
7 group_516 EHELCC_00460 109188 111497 1 pbpC peptidoglycan glycosyltransferase PbpC Morganella morganii S2
8 group_1556 EHELCC_04880 299449 301380 1 mrdA peptidoglycan DD-transpeptidase MrdA Morganella morganii S2
9 group_863 EHELCC_05655 122506 124299 -1 ftsI Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) Morganella morganii S2
10 group_3577 EHELCC_07600 262178 264538 1 pbpC penicillin-binding protein 1C Morganella morganii S2
11 group_1312 EHELCC_13865 114793 117300 1 mrcB bifunctional glycosyl transferase/transpeptidase Morganella morganii S2
12 group_1593 EHELCC_14720 32382 34835 -1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Morganella morganii S2
13 group_3793 EHELCC_19860 706 1536 -1 blaOXA-1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 Morganella morganii S2
14 group_516 NLDBIP_03000 568639 570948 -1 pbpC peptidoglycan glycosyltransferase PbpC Morganella morganii S4
15 group_1556 NLDBIP_04880 299245 301176 1 mrdA peptidoglycan DD-transpeptidase MrdA Morganella morganii S4
16 group_863 NLDBIP_05975 163571 165364 -1 ftsI Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) Morganella morganii S4
17 group_3577 NLDBIP_07925 262051 264411 1 pbpC penicillin-binding protein 1C Morganella morganii S4
18 group_1312 NLDBIP_14310 135668 138175 1 mrcB bifunctional glycosyl transferase/transpeptidase Morganella morganii S4
19 group_1593 NLDBIP_14550 32382 34835 -1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Morganella morganii S4
20 group_863 LHKJJB_02855 141095 142888 -1 ftsI Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) Morganella morganii S3
21 group_516 LHKJJB_04515 175880 178189 -1 pbpC peptidoglycan glycosyltransferase PbpC Morganella morganii S3
22 group_3577 LHKJJB_07460 225797 228157 1 pbpC penicillin-binding protein 1C Morganella morganii S3
23 group_1312 LHKJJB_08540 21574 24081 -1 mrcB bifunctional glycosyl transferase/transpeptidase Morganella morganii S3
24 group_1556 LHKJJB_13750 34202 36133 -1 mrdA peptidoglycan DD-transpeptidase MrdA Morganella morganii S3
25 group_1593 LHKJJB_14795 106891 109344 1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Morganella morganii S3
26 group_516 HKOGLL_02530 109393 111702 1 pbpC peptidoglycan glycosyltransferase PbpC Morganella morganii S5
27 group_3577 HKOGLL_03470 5230 7590 -1 pbpC penicillin-binding protein 1C Morganella morganii S5
28 group_863 HKOGLL_06330 62959 64752 -1 ftsI Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) Morganella morganii S5
29 group_1312 HKOGLL_08090 21574 24081 -1 mrcB bifunctional glycosyl transferase/transpeptidase Morganella morganii S5
30 group_1556 HKOGLL_12785 108265 110196 1 mrdA peptidoglycan DD-transpeptidase MrdA Morganella morganii S5
31 group_1593 HKOGLL_13415 106891 109344 1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Morganella morganii S5
32 group_1556 F4V73_RS00255 62221 64101 -1 mrdA peptidoglycan DD-transpeptidase MrdA Morganella psychrotolerans
33 group_516 F4V73_RS07155 1485243 1487552 -1 pbpC peptidoglycan glycosyltransferase PbpC Morganella psychrotolerans
34 group_863 F4V73_RS08810 1824169 1825962 -1 ftsI peptidoglycan glycosyltransferase FtsI Morganella psychrotolerans
35 group_1312 F4V73_RS12955 200618 203131 -1 mrcB bifunctional glycosyl transferase/transpeptidase Morganella psychrotolerans
36 group_1593 F4V73_RS14080 28912 31437 -1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Morganella psychrotolerans
37 group_1312 PMI_RS00980 240095 242407 1 mrcB bifunctional glycosyl transferase/transpeptidase Proteus mirabilis HI4320
38 group_1556 PMI_RS02100 493408 495303 -1 mrdA peptidoglycan DD-transpeptidase MrdA Proteus mirabilis HI4320
39 group_516 PMI_RS09130 1987285 1989606 -1 pbpC peptidoglycan glycosyltransferase PbpC Proteus mirabilis HI4320
40 group_863 PMI_RS10230 2240779 2242575 -1 ftsI peptidoglycan glycosyltransferase FtsI Proteus mirabilis HI4320
41 group_1593 PMI_RS14945 3317025 3319559 -1 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA Proteus mirabilis HI4320