Orthogroup:group_932


Homologs in group_932

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05060 FBDBKF_05060 Morganella morganii S1 rnb exoribonuclease II
EHELCC_12530 EHELCC_12530 Morganella morganii S2 rnb exoribonuclease II
NLDBIP_12870 NLDBIP_12870 Morganella morganii S4 rnb exoribonuclease II
LHKJJB_12730 LHKJJB_12730 Morganella morganii S3 rnb exoribonuclease II
HKOGLL_11345 HKOGLL_11345 Morganella morganii S5 rnb exoribonuclease II
F4V73_RS05500 F4V73_RS05500 Morganella psychrotolerans - exoribonuclease II
PMI_RS06325 PMI_RS06325 Proteus mirabilis HI4320 - exoribonuclease II

Distribution of group_932 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_932 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_932

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_932.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rnb 5
2 - 2

Product

# Product Occurence
1 exoribonuclease II 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4776 7 K Transcription (K) Exoribonuclease II

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01147 7 exoribonuclease II [EC:3.1.13.1] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00575 7 S1 RNA binding domain
PF00773 7 RNB domain
PF08206 7 Ribonuclease B OB domain

Annotations of the 147 SwissProt hits

Annotation Number of occurrences
3'-5' exoribonuclease HELZ2 2
Acetazolamide conferring resistance protein zam 1
DIS3-like exonuclease 1 8
DIS3-like exonuclease 2 6
Exoribonuclease 2 93
Exoribonuclease II, mitochondrial 2
Exosome complex exonuclease DIS3 1
Exosome complex exonuclease RRP44 2
Exosome complex exonuclease RRP44 homolog A 1
Exosome complex exonuclease dis3 1
Inactive exonuclease DIS3L2 1
Mitochondrial exoribonuclease DSS-1 1
Mitochondrial protein cyt-4 1
Probable exosome complex exonuclease RRP44 1
Protein SSD1 1
Ribonuclease II, chloroplastic/mitochondrial 1
Ribonuclease R 19
Ribonuclease R (Fragment) 1
Ribonuclease R 1 1
Ribonuclease R 2 1
Uncharacterized ribonuclease sll1290 1
Virulence protein SSD1 1

Protein length

Min length 645
Max length 647
Mean length (sd) 645.3 (0.8)
Median length 645.0

Protein length distribution