Orthogroup:group_1604


Homologs in group_1604

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10480 FBDBKF_10480 Morganella morganii S1 sodA superoxide dismutase [Mn]
EHELCC_14815 EHELCC_14815 Morganella morganii S2 sodA superoxide dismutase [Mn]
NLDBIP_14645 NLDBIP_14645 Morganella morganii S4 sodA superoxide dismutase [Mn]
LHKJJB_14700 LHKJJB_14700 Morganella morganii S3 sodA superoxide dismutase [Mn]
HKOGLL_13320 HKOGLL_13320 Morganella morganii S5 sodA superoxide dismutase [Mn]
F4V73_RS14190 F4V73_RS14190 Morganella psychrotolerans sodA superoxide dismutase [Mn]
PMI_RS15020 PMI_RS15020 Proteus mirabilis HI4320 sodA superoxide dismutase [Mn]

Distribution of group_1604 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1604 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1604

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1604.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sodA 7

Product

# Product Occurence
1 superoxide dismutase [Mn] 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0605 7 P Inorganic ion transport and metabolism (P) Superoxide dismutase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00081 7 Iron/manganese superoxide dismutases, alpha-hairpin domain
PF02777 7 Iron/manganese superoxide dismutases, C-terminal domain

Annotations of the 239 SwissProt hits

Annotation Number of occurrences
Probable superoxide dismutase [Fe] 1
Probable superoxide dismutase [Mn], mitochondrial 1
Small ribosomal subunit protein mS42 1
Small ribosomal subunit protein mS43 1
Superoxide dismutase [Fe-Zn] 1 1
Superoxide dismutase [Fe] 48
Superoxide dismutase [Fe] (Fragment) 1
Superoxide dismutase [Fe] 1, chloroplastic 2
Superoxide dismutase [Fe] 2, chloroplastic 2
Superoxide dismutase [Fe] 3, chloroplastic 1
Superoxide dismutase [Fe], chloroplastic 1
Superoxide dismutase [Fe], chloroplastic (Fragment) 1
Superoxide dismutase [Mn/Fe] 20
Superoxide dismutase [Mn/Fe] (Fragment) 9
Superoxide dismutase [Mn/Fe] 1 8
Superoxide dismutase [Mn/Fe] 2 9
Superoxide dismutase [Mn] 55
Superoxide dismutase [Mn] (Fragment) 10
Superoxide dismutase [Mn] 1 6
Superoxide dismutase [Mn] 1 (Fragment) 1
Superoxide dismutase [Mn] 1, mitochondrial 2
Superoxide dismutase [Mn] 2 5
Superoxide dismutase [Mn] 2 (Fragment) 1
Superoxide dismutase [Mn] 2, mitochondrial 2
Superoxide dismutase [Mn] 3 (Fragment) 1
Superoxide dismutase [Mn] 3.1, mitochondrial 1
Superoxide dismutase [Mn] 3.2, mitochondrial 1
Superoxide dismutase [Mn] 3.3, mitochondrial 1
Superoxide dismutase [Mn] 3.4, mitochondrial 1
Superoxide dismutase [Mn], mitochondrial 37
Superoxide dismutase [Mn], mitochondrial (Fragment) 8

Protein length

Min length 206
Max length 207
Mean length (sd) 206.1 (0.4)
Median length 206.0

Protein length distribution