PF00588

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00588
Protein list: lists the 35 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00588
Description SpoU rRNA Methylase family

Occurence in the database

PF00588 is associated with 35 different proteins
The 35 proteins are classified into 5 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_605 FBDBKF_01145 212587 213324 -1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Morganella morganii S1
1 group_1428 FBDBKF_08490 80252 80986 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S1
2 group_1620 FBDBKF_10195 132410 133498 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S1
3 group_1766 FBDBKF_12055 62064 62717 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S1
4 group_2210 FBDBKF_16355 58564 59067 -1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL Morganella morganii S1
5 group_605 EHELCC_00400 95544 96281 1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Morganella morganii S2
6 group_1620 EHELCC_04995 324375 325463 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S2
7 group_1428 EHELCC_13035 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S2
8 group_1766 EHELCC_14250 71988 72641 -1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S2
9 group_2210 EHELCC_16390 58564 59067 -1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL Morganella morganii S2
10 group_605 NLDBIP_03060 583855 584592 -1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Morganella morganii S4
11 group_1620 NLDBIP_04995 324171 325259 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S4
12 group_1428 NLDBIP_13375 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S4
13 group_1766 NLDBIP_15345 75925 76578 -1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S4
14 group_2210 NLDBIP_16950 3103 3606 1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL Morganella morganii S4
15 group_605 LHKJJB_04575 191096 191833 -1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Morganella morganii S3
16 group_1428 LHKJJB_13180 78970 79704 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S3
17 group_1620 LHKJJB_13635 10119 11207 1 spoU tRNA/rRNA methyltransferase Morganella morganii S3
18 group_1766 LHKJJB_15265 62064 62717 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S3
19 group_2210 LHKJJB_16870 6205 6708 1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL Morganella morganii S3
20 group_605 HKOGLL_02470 95749 96486 1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Morganella morganii S5
21 group_1428 HKOGLL_11850 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S5
22 group_1620 HKOGLL_12900 133191 134279 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S5
23 group_1766 HKOGLL_14385 48727 49380 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S5
24 group_2210 HKOGLL_16970 58564 59067 -1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL Morganella morganii S5
25 group_1620 F4V73_RS00135 36468 37547 1 tRNA/rRNA methyltransferase Morganella psychrotolerans
26 group_605 F4V73_RS07215 1500605 1501342 -1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Morganella psychrotolerans
27 group_1428 F4V73_RS09710 46443 47177 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella psychrotolerans
28 group_1766 F4V73_RS14590 151659 152363 -1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella psychrotolerans
29 group_2210 F4V73_RS17220 75822 76325 1 trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL Morganella psychrotolerans
30 group_1620 PMI_RS01975 465490 466593 1 tRNA/rRNA methyltransferase Proteus mirabilis HI4320
31 group_605 PMI_RS09190 2002747 2003475 -1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ Proteus mirabilis HI4320
32 group_1766 PMI_RS14160 3143074 3143793 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Proteus mirabilis HI4320
33 group_2210 PMI_RS15760 3500457 3500960 -1 trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL Proteus mirabilis HI4320
34 group_1428 PMI_RS16785 3701905 3702636 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Proteus mirabilis HI4320