Homologs in group_528

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01145 FBDBKF_01145 95.9 Morganella morganii S1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
EHELCC_00400 EHELCC_00400 95.9 Morganella morganii S2 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
NLDBIP_03060 NLDBIP_03060 95.9 Morganella morganii S4 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
LHKJJB_04575 LHKJJB_04575 95.9 Morganella morganii S3 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
HKOGLL_02470 HKOGLL_02470 95.9 Morganella morganii S5 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
PMI_RS09190 PMI_RS09190 77.7 Proteus mirabilis HI4320 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ

Distribution of the homologs in the orthogroup group_528

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_528

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N222 6.68e-148 415 82 1 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A1JKQ0 1.03e-132 377 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8AD50 1.71e-129 369 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A7MGX5 1.74e-129 369 73 1 240 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Cronobacter sakazakii (strain ATCC BAA-894)
A6TCF3 2.44e-129 368 71 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q667X9 3.41e-129 368 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TMV6 3.41e-129 368 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis (strain Pestoides F)
Q1CKB1 3.41e-129 368 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis bv. Antiqua (strain Nepal516)
Q7CJN8 3.41e-129 368 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis
Q1C5G8 3.41e-129 368 73 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis bv. Antiqua (strain Antiqua)
Q57LG7 3.68e-129 367 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella choleraesuis (strain SC-B67)
P66974 4.49e-129 367 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P66975 4.49e-129 367 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella typhi
Q5PNG3 4.49e-129 367 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P0AE03 1.14e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella flexneri
Q0T1Y7 1.14e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella flexneri serotype 5b (strain 8401)
Q31XV8 1.14e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella boydii serotype 4 (strain Sb227)
Q1R8K0 1.14e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli (strain UTI89 / UPEC)
P0AE01 1.14e-127 364 70 1 244 1 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli (strain K12)
P0AE02 1.14e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1AE69 1.14e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O1:K1 / APEC
Q3YZ20 1.21e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella sonnei (strain Ss046)
Q32D32 1.21e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella dysenteriae serotype 1 (strain Sd197)
Q8XA83 1.21e-127 364 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O157:H7
Q0TEV3 6.25e-127 362 70 1 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q6D257 8.49e-127 362 71 1 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q2NS29 7.85e-123 352 69 2 244 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Sodalis glossinidius (strain morsitans)
P44676 5.71e-88 263 55 4 241 1 HI_0380 Uncharacterized tRNA/rRNA methyltransferase HI_0380 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZF87 1.07e-81 248 47 2 248 1 trmJ tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ Pseudomonas aeruginosa (strain UCBPP-PA14)
Q58871 9.71e-24 98 34 3 155 3 trmJ tRNA (cytidine-2'-O-)-methyltransferase TrmJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q4JB16 2.34e-22 94 39 5 156 1 trmJ tRNA (cytidine-2'-O-)-methyltransferase TrmJ Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P37005 1.13e-21 92 35 2 156 3 lasT Uncharacterized tRNA/rRNA methyltransferase LasT Escherichia coli (strain K12)
P37006 2.56e-11 64 31 2 118 3 lasT Uncharacterized tRNA/rRNA methyltransferase LasT (Fragment) Serratia marcescens
P74261 0.000713 43 26 3 156 3 slr1673 Uncharacterized tRNA/rRNA methyltransferase slr1673 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07215
Feature type CDS
Gene trmJ
Product tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
Location 1500605 - 1501342 (strand: -1)
Length 738 (nucleotides) / 245 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_528
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00588 SpoU rRNA Methylase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0565 Translation, ribosomal structure and biogenesis (J) J tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15396 tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] - -

Protein Sequence

MSENIRIVLVETSHTGNMGSAARAMKTMGLSNLYLVNPQVQPDSHSIALSAGASDVIGNAKIVSSLDEAIAGCELVIGTSARSRTLPWPMVEPRECGEKSVKAALTAPVAIIFGRERVGLTNDELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAFLASQNESQPPHHDEEDEVHYPPADDMERFYTHLESVLNESGFIRKAHPGQIMNRLRRLFTRAHPEVQELNILRGILTSVEKWAKK

Flanking regions ( +/- flanking 50bp)

GACTATTCTTGTGTTAAGATAAAGCGATAATTTCTCAAATATAGCTTGTTATGTCTGAAAACATCCGAATTGTTCTGGTCGAAACCTCACACACCGGCAACATGGGCTCCGCTGCGCGCGCCATGAAAACGATGGGGTTATCTAACCTTTATCTGGTTAATCCGCAGGTTCAGCCTGATTCCCACTCTATTGCACTCTCAGCGGGTGCCAGCGATGTTATCGGCAATGCAAAAATTGTCAGCTCGCTGGATGAGGCAATCGCCGGATGTGAACTGGTGATTGGCACCAGTGCGCGTTCCCGTACATTGCCCTGGCCGATGGTTGAACCGCGTGAATGCGGTGAAAAAAGTGTCAAAGCTGCACTGACCGCACCCGTCGCCATTATTTTTGGTCGCGAGCGTGTCGGGCTGACCAACGACGAGCTGCAAAAATGCAATTATCATCTTTATATTCCGACCAACCCGGAGTACGGTTCACTGAACCTGGCGATGGCGGTACAGCTGGTCAGTTATGAGATCCGTATGGCATTTCTGGCCTCTCAGAATGAGAGCCAACCGCCACATCATGATGAAGAGGATGAGGTACACTATCCGCCGGCTGATGATATGGAGCGGTTTTATACGCATCTTGAATCGGTATTAAATGAATCCGGTTTCATCCGCAAAGCGCATCCCGGTCAGATTATGAACCGCCTGCGCCGCTTATTTACCCGCGCGCATCCGGAAGTGCAGGAGCTGAATATCCTGCGCGGCATACTGACTTCTGTTGAAAAATGGGCAAAAAAATAGTTGAGTAATTTACTGGGTTAAATAGTTGACTAAATTACTCAGGAATGACA