Homologs in group_528

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01145 FBDBKF_01145 78.5 Morganella morganii S1 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
EHELCC_00400 EHELCC_00400 78.5 Morganella morganii S2 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
NLDBIP_03060 NLDBIP_03060 78.5 Morganella morganii S4 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
LHKJJB_04575 LHKJJB_04575 78.5 Morganella morganii S3 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
HKOGLL_02470 HKOGLL_02470 78.5 Morganella morganii S5 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
F4V73_RS07215 F4V73_RS07215 77.7 Morganella psychrotolerans trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ

Distribution of the homologs in the orthogroup group_528

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_528

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N222 1.31e-140 396 78 1 242 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P0AE03 5.95e-128 365 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella flexneri
Q0T1Y7 5.95e-128 365 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella flexneri serotype 5b (strain 8401)
Q31XV8 5.95e-128 365 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella boydii serotype 4 (strain Sb227)
Q1R8K0 5.95e-128 365 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli (strain UTI89 / UPEC)
P0AE01 5.95e-128 365 71 0 241 1 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli (strain K12)
P0AE02 5.95e-128 365 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1AE69 5.95e-128 365 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O1:K1 / APEC
Q3YZ20 6.84e-128 364 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella sonnei (strain Ss046)
Q32D32 6.84e-128 364 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Shigella dysenteriae serotype 1 (strain Sd197)
Q8XA83 6.84e-128 364 71 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O157:H7
Q0TEV3 2.98e-127 363 70 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A8AD50 1.21e-126 361 70 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q57LG7 2.1e-126 360 70 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella choleraesuis (strain SC-B67)
P66974 4.14e-126 360 70 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P66975 4.14e-126 360 70 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella typhi
Q5PNG3 4.14e-126 360 70 0 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A1JKQ0 2.41e-125 358 69 2 246 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q667X9 1.59e-124 356 70 2 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TMV6 1.59e-124 356 70 2 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis (strain Pestoides F)
Q1CKB1 1.59e-124 356 70 2 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis bv. Antiqua (strain Nepal516)
Q7CJN8 1.59e-124 356 70 2 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis
Q1C5G8 1.59e-124 356 70 2 245 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Yersinia pestis bv. Antiqua (strain Antiqua)
A7MGX5 2.73e-124 355 69 1 239 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Cronobacter sakazakii (strain ATCC BAA-894)
A6TCF3 2.52e-123 353 69 1 242 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q6D257 1.01e-120 346 69 2 239 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q2NS29 7.05e-119 342 66 1 241 3 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ Sodalis glossinidius (strain morsitans)
P44676 4.22e-85 256 53 3 238 1 HI_0380 Uncharacterized tRNA/rRNA methyltransferase HI_0380 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZF87 5.25e-84 253 48 2 248 1 trmJ tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ Pseudomonas aeruginosa (strain UCBPP-PA14)
Q58871 3.43e-25 102 35 3 159 3 trmJ tRNA (cytidine-2'-O-)-methyltransferase TrmJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q4JB16 1.86e-23 97 41 5 156 1 trmJ tRNA (cytidine-2'-O-)-methyltransferase TrmJ Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P37005 6.26e-22 93 32 2 171 3 lasT Uncharacterized tRNA/rRNA methyltransferase LasT Escherichia coli (strain K12)
P37006 8.54e-11 62 32 1 106 3 lasT Uncharacterized tRNA/rRNA methyltransferase LasT (Fragment) Serratia marcescens
Q4L3J1 2.04e-05 48 28 4 150 3 SH2477 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus haemolyticus (strain JCSC1435)
Q8CTT9 0.000156 45 26 4 150 3 SE_0294 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRM1 0.000156 45 26 4 150 3 SERP0172 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q9AGT0 0.000211 45 25 3 144 3 NWMN_0494 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain Newman)
Q5HIE3 0.000211 45 25 3 144 3 SACOL0578 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain COL)
Q7A1Q9 0.000229 44 25 3 144 3 MW0487 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain MW2)
Q6GBV6 0.000229 44 25 3 144 3 SAS0489 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain MSSA476)
Q6GJD7 0.000229 44 25 3 144 3 SAR0535 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain MRSA252)
Q7A794 0.000229 44 25 3 144 1 SA0490 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain N315)
Q99W72 0.000229 44 25 3 144 3 SAV0531 Putative TrmH family tRNA/rRNA methyltransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
P74261 0.000458 43 40 0 52 3 slr1673 Uncharacterized tRNA/rRNA methyltransferase slr1673 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09190
Feature type CDS
Gene trmJ
Product tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
Location 2002747 - 2003475 (strand: -1)
Length 729 (nucleotides) / 242 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_528
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00588 SpoU rRNA Methylase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0565 Translation, ribosomal structure and biogenesis (J) J tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15396 tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] - -

Protein Sequence

MLENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEKPDSHSIALSAGASDVIGNAHIVETIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAANKPVAVIFGRERTGLTNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPPAEDIERFYVHLEQVLNESGFIRPKHPGQVMSRLRRLFTRARPETQELHILRGILTSVEKWAKK

Flanking regions ( +/- flanking 50bp)

CTACATTTGTGATAAAATAGATGGATCATAAAACAATTAGTTAGAAATCAATGTTAGAAAATATTCGCATTATCCTTGTCGAAACTTCACATACAGGCAATATGGGCTCGACAGCTCGTGCTATGAAAACCATGGGATTAACGAATCTTTATTTTGTTAATCCTAAAGAAAAACCCGACTCTCACTCTATAGCCTTATCAGCAGGGGCAAGCGATGTTATTGGCAATGCCCATATTGTTGAGACTATTGATGATGCCATTGAAGGCTGTGGGTTAGTGATTGGAACAAGTGCGCGTAATCGTACGCTCTCTTGGCCAATGCTAGCACCTCGTGAATGTGGTGAACGTTGCGTAAAAGAGGCAGCAAATAAGCCCGTTGCGGTGATCTTTGGCCGTGAACGCACAGGCTTAACTAATGAAGAATTACAAAAATGTGATTACCACCTCTATATTCCTACCAACCCTGAATATGGCTCTTTAAACTTAGCGATGGCGGTGCAACTTGTTTGTTATGAAATTCGCATGGCTGCACTTGCTCAACAGGAAAAACAAGAGGAAAATGCTTCATCAGAGATTGATTATCCACCCGCTGAAGATATTGAACGCTTTTATGTTCACTTAGAGCAGGTACTTAATGAGTCTGGTTTTATTCGTCCTAAACATCCAGGACAAGTGATGAGTCGTTTACGCCGTTTGTTTACACGCGCACGTCCAGAAACACAAGAGCTTCATATCTTACGTGGTATTTTAACATCCGTTGAAAAATGGGCTAAGAAATAAAGGATTAAGTTGATTAACATGCGTCATTGTTGCTGAGCTTAATACCTGAC