Orthogroup:group_1620


Homologs in group_1620

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10685 FBDBKF_10685 Morganella morganii S1 glpR DeoR/GlpR family transcriptional regulator
EHELCC_15020 EHELCC_15020 Morganella morganii S2 glpR DeoR/GlpR family transcriptional regulator
NLDBIP_14850 NLDBIP_14850 Morganella morganii S4 glpR DeoR/GlpR family transcriptional regulator
LHKJJB_14495 LHKJJB_14495 Morganella morganii S3 glpR DeoR/GlpR family transcriptional regulator
HKOGLL_13115 HKOGLL_13115 Morganella morganii S5 glpR DeoR/GlpR family transcriptional regulator
F4V73_RS14400 F4V73_RS14400 Morganella psychrotolerans - DeoR/GlpR family transcriptional regulator
PMI_RS14480 PMI_RS14480 Proteus mirabilis HI4320 - DeoR/GlpR family transcriptional regulator

Distribution of group_1620 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1620 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1620

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1620.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 glpR 5
2 - 2

Product

# Product Occurence
1 DeoR/GlpR family transcriptional regulator 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1349 7 KG Transcription (K)
Carbohydrate transport and metabolism (G)		 DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02444 7 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00455 7 DeoR C terminal sensor domain
PF08220 7 DeoR-like helix-turn-helix domain

Annotations of the 82 SwissProt hits

Annotation Number of occurrences
Deoxyribose operon repressor 3
Glucitol operon repressor 1
Glycerol-3-phosphate regulon repressor 4
HTH-type transcriptional regulator GlpR 1
HTH-type transcriptional regulator GolR 1
HTH-type transcriptional regulator IolR 1
HTH-type transcriptional regulator UlaR 41
HTH-type transcriptional repressor CsqR 1
HTH-type transcriptional repressor GlcR 1
L-fucose operon activator 3
Lactose phosphotransferase system repressor 11
Putative aga operon transcriptional repressor 3
Putative galactitol utilization operon repressor 1
Putative sgc region transcriptional regulator 1
Transcriptional repressor AccR 1
Uncharacterized HTH-type transcriptional regulator FruR 1
Uncharacterized HTH-type transcriptional regulator HI_1009 1
Uncharacterized HTH-type transcriptional regulator SE_1102 1
Uncharacterized HTH-type transcriptional regulator YciT 1
Uncharacterized HTH-type transcriptional regulator YdjF 1
Uncharacterized HTH-type transcriptional regulator YgbI 1
Uncharacterized HTH-type transcriptional regulator YtzE 1
Uncharacterized HTH-type transcriptional regulator YulB 1

Protein length

Min length 252
Max length 253
Mean length (sd) 252.1 (0.4)
Median length 252.0

Protein length distribution