Orthogroup:group_1620


Homologs in group_1620

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10195 FBDBKF_10195 Morganella morganii S1 spoU tRNA/rRNA methyltransferase
EHELCC_04995 EHELCC_04995 Morganella morganii S2 spoU tRNA/rRNA methyltransferase
NLDBIP_04995 NLDBIP_04995 Morganella morganii S4 spoU tRNA/rRNA methyltransferase
LHKJJB_13635 LHKJJB_13635 Morganella morganii S3 spoU tRNA/rRNA methyltransferase
HKOGLL_12900 HKOGLL_12900 Morganella morganii S5 spoU tRNA/rRNA methyltransferase
F4V73_RS00135 F4V73_RS00135 Morganella psychrotolerans - tRNA/rRNA methyltransferase
PMI_RS01975 PMI_RS01975 Proteus mirabilis HI4320 - tRNA/rRNA methyltransferase

Distribution of group_1620 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1620 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1620

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1620.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 spoU 5
2 - 2

Product

# Product Occurence
1 tRNA/rRNA methyltransferase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0566 7 J Translation, ribosomal structure and biogenesis (J) tRNA G18 (ribose-2'-O)-methylase SpoU

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03214 7 RNA methyltransferase, TrmH family [EC:2.1.1.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00588 7 SpoU rRNA Methylase family
PF08032 7 RNA 2'-O ribose methyltransferase substrate binding

Annotations of the 99 SwissProt hits

Annotation Number of occurrences
23S rRNA (adenosine(1067)-2'-O)-methyltransferase 1
23S rRNA (guanosine(2553)-2'-O)-methyltransferase RlmP 1
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 37
Eukaryotic translation initiation factor 3 subunit A 1
Pre-mRNA-splicing factor CWC22 homolog 1
Probable methyltransferase TARBP1 1
Putative TrmH family tRNA/rRNA methyltransferase 11
Putative TrmH family tRNA/rRNA methyltransferase YacO 1
Putative tRNA (cytidine(34)-2'-O)-methyltransferase 1
Uncharacterized tRNA/rRNA methyltransferase AF_2399 1
Uncharacterized tRNA/rRNA methyltransferase BB_0516 1
Uncharacterized tRNA/rRNA methyltransferase BCG_3644c 1
Uncharacterized tRNA/rRNA methyltransferase HI_0424 1
Uncharacterized tRNA/rRNA methyltransferase MAB_0572 1
Uncharacterized tRNA/rRNA methyltransferase MAP_0479 1
Uncharacterized tRNA/rRNA methyltransferase MAV_0574 1
Uncharacterized tRNA/rRNA methyltransferase MG252 1
Uncharacterized tRNA/rRNA methyltransferase MG252 homolog 1
Uncharacterized tRNA/rRNA methyltransferase ML0324 1
Uncharacterized tRNA/rRNA methyltransferase MLBr00324 1
Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 1
Uncharacterized tRNA/rRNA methyltransferase MRA_3618 1
Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073/MSMEI_5913 1
Uncharacterized tRNA/rRNA methyltransferase MT0904 1
Uncharacterized tRNA/rRNA methyltransferase MT3685 1
Uncharacterized tRNA/rRNA methyltransferase MUL_4155 1
Uncharacterized tRNA/rRNA methyltransferase Mb0905 1
Uncharacterized tRNA/rRNA methyltransferase Mb3610c 1
Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 1
Uncharacterized tRNA/rRNA methyltransferase Mjls_5122 1
Uncharacterized tRNA/rRNA methyltransferase Mkms_4822 1
Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736 1
Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 1
Uncharacterized tRNA/rRNA methyltransferase Rv0881 1
Uncharacterized tRNA/rRNA methyltransferase Rv3579c 1
Uncharacterized tRNA/rRNA methyltransferase YfiF 2
Uncharacterized tRNA/rRNA methyltransferase slr0955 1
Uncharacterized tRNA/rRNA methyltransferase slr1673 1
rRNA methyltransferase 1, mitochondrial 5
tRNA (cytidine(34)-2'-O)-methyltransferase 1
tRNA (guanosine(18)-2'-O)-methyltransferase 8

Protein length

Min length 359
Max length 367
Mean length (sd) 362.3 (2.4)
Median length 362.0

Protein length distribution