PF00501


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00501, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 43 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00501
Description AMP-binding enzyme

Occurence in the database

PF00501 is associated with 43 different proteins (see tab "Protein list" and "Profile")
The 43 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_242 FBDBKF_02225 135644 137335 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S1
1 group_867 FBDBKF_04400 70824 72632 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S1
2 group_334 FBDBKF_10485 52763 54718 1 acs acetate--CoA ligase Morganella morganii S1
3 group_1881 FBDBKF_14065 5156 6547 -1 menE o-succinylbenzoate--CoA ligase Morganella morganii S1
4 group_2031 FBDBKF_15220 54486 56639 1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Morganella morganii S1
5 group_3015 FBDBKF_17880 1296 7400 1 tam Trans-aconitate methyltransferase Morganella morganii S1
6 group_242 EHELCC_02695 523464 525155 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S2
7 group_867 EHELCC_05690 130281 132089 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S2
8 group_3015 EHELCC_06455 28976 35080 -1 tam Trans-aconitate methyltransferase Morganella morganii S2
9 group_1881 EHELCC_08215 110438 111829 1 menE o-succinylbenzoate--CoA ligase Morganella morganii S2
10 group_2031 EHELCC_11025 28267 30420 -1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Morganella morganii S2
11 group_334 EHELCC_14820 52753 54708 1 acs acetate--CoA ligase Morganella morganii S2
12 group_242 NLDBIP_00765 154981 156672 -1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S4
13 group_867 NLDBIP_06010 171346 173154 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S4
14 group_3015 NLDBIP_06775 28849 34953 -1 tam Trans-aconitate methyltransferase Morganella morganii S4
15 group_1881 NLDBIP_08540 110438 111829 1 menE o-succinylbenzoate--CoA ligase Morganella morganii S4
16 group_2031 NLDBIP_11370 28267 30420 -1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Morganella morganii S4
17 group_334 NLDBIP_14650 52753 54708 1 acs acetate--CoA ligase Morganella morganii S4
18 group_242 LHKJJB_01270 236013 237704 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S3
19 group_867 LHKJJB_02890 148870 150678 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S3
20 group_1881 LHKJJB_05725 145330 146721 -1 menE o-succinylbenzoate--CoA ligase Morganella morganii S3
21 group_2031 LHKJJB_11230 28267 30420 -1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Morganella morganii S3
22 group_334 LHKJJB_14695 87018 88973 -1 acs acetate--CoA ligase Morganella morganii S3
23 group_3015 LHKJJB_18885 1304 7408 1 tam Trans-aconitate methyltransferase Morganella morganii S3
24 group_242 HKOGLL_01310 241524 243215 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella morganii S5
25 group_3015 HKOGLL_04615 234688 240792 1 tam Trans-aconitate methyltransferase Morganella morganii S5
26 group_1881 HKOGLL_05190 95029 96420 1 menE o-succinylbenzoate--CoA ligase Morganella morganii S5
27 group_867 HKOGLL_06365 70734 72542 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S5
28 group_2031 HKOGLL_09840 28267 30420 -1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Morganella morganii S5
29 group_334 HKOGLL_13315 87018 88973 -1 acs acetate--CoA ligase Morganella morganii S5
30 group_1881 F4V73_RS02870 607893 609287 1 menE o-succinylbenzoate--CoA ligase Morganella psychrotolerans
31 group_242 F4V73_RS04595 972360 974051 1 fadD long-chain-fatty-acid--CoA ligase FadD Morganella psychrotolerans
32 group_867 F4V73_RS08845 1831951 1833759 -1 long-chain fatty acid--CoA ligase Morganella psychrotolerans
33 group_334 F4V73_RS11965 546943 548283 1 AMP-binding protein Morganella psychrotolerans
34 group_2031 F4V73_RS12225 27741 29894 -1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Morganella psychrotolerans
35 group_334 F4V73_RS14195 54624 56579 1 acs acetate--CoA ligase Morganella psychrotolerans
36 group_2031 PMI_RS01780 421591 423750 1 aas bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase Proteus mirabilis HI4320
37 group_242 PMI_RS05625 1226739 1228427 1 fadD long-chain-fatty-acid--CoA ligase FadD Proteus mirabilis HI4320
38 group_1881 PMI_RS08545 1863524 1864948 -1 menE o-succinylbenzoate--CoA ligase Proteus mirabilis HI4320
39 group_867 PMI_RS10255 2246231 2248039 -1 long-chain fatty acid--CoA ligase Proteus mirabilis HI4320
40 group_3015 PMI_RS12835 2834947 2841051 1 non-ribosomal peptide synthetase Proteus mirabilis HI4320
41 group_242 PMI_RS13090 2906571 2908127 1 caiC crotonobetaine/carnitine-CoA ligase Proteus mirabilis HI4320
42 group_334 PMI_RS15025 3332999 3334957 1 acs acetate--CoA ligase Proteus mirabilis HI4320