PF00383
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00383, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 22 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00383 |
Description |
Cytidine and deoxycytidylate deaminase zinc-binding region |
Occurence in the database
PF00383 is associated with 22 different proteins (see tab "Protein list" and "Profile") |
The 22 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2568 |
FBDBKF_02735 |
244119 |
244577 |
-1 |
tadA |
tRNA(Arg) A34 adenosine deaminase TadA |
Morganella morganii S1 |
1 |
group_1181 |
FBDBKF_06810 |
25548 |
26432 |
-1 |
cdd |
cytidine deaminase |
Morganella morganii S1 |
2 |
group_2256 |
FBDBKF_17380 |
6687 |
7799 |
-1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Morganella morganii S1 |
3 |
group_2568 |
EHELCC_03205 |
631939 |
632397 |
-1 |
tadA |
tRNA(Arg) A34 adenosine deaminase TadA |
Morganella morganii S2 |
4 |
group_1181 |
EHELCC_04160 |
159754 |
160638 |
1 |
cdd |
cytidine deaminase |
Morganella morganii S2 |
5 |
group_2256 |
EHELCC_17275 |
6687 |
7799 |
-1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Morganella morganii S2 |
6 |
group_2568 |
NLDBIP_00255 |
47739 |
48197 |
1 |
tadA |
tRNA(Arg) A34 adenosine deaminase TadA |
Morganella morganii S4 |
7 |
group_1181 |
NLDBIP_04160 |
159550 |
160434 |
1 |
cdd |
cytidine deaminase |
Morganella morganii S4 |
8 |
group_2256 |
NLDBIP_17920 |
34997 |
36109 |
1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Morganella morganii S4 |
9 |
group_2568 |
LHKJJB_01780 |
344488 |
344946 |
-1 |
tadA |
tRNA(Arg) A34 adenosine deaminase TadA |
Morganella morganii S3 |
10 |
group_1181 |
LHKJJB_09990 |
159664 |
160548 |
1 |
cdd |
cytidine deaminase |
Morganella morganii S3 |
11 |
group_2256 |
LHKJJB_17840 |
34995 |
36107 |
1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Morganella morganii S3 |
12 |
group_2568 |
HKOGLL_01820 |
349999 |
350457 |
-1 |
tadA |
tRNA(Arg) A34 adenosine deaminase TadA |
Morganella morganii S5 |
13 |
group_1181 |
HKOGLL_08985 |
30504 |
31388 |
-1 |
cdd |
cytidine deaminase |
Morganella morganii S5 |
14 |
group_2256 |
HKOGLL_17850 |
34995 |
36107 |
1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Morganella morganii S5 |
15 |
group_1181 |
F4V73_RS00950 |
202296 |
203180 |
-1 |
cdd |
cytidine deaminase |
Morganella psychrotolerans |
16 |
group_3826 |
F4V73_RS02875 |
609326 |
611116 |
-1 |
|
anti-phage dCTP deaminase |
Morganella psychrotolerans |
17 |
group_2568 |
F4V73_RS05215 |
1110504 |
1110962 |
-1 |
|
nucleoside deaminase |
Morganella psychrotolerans |
18 |
group_2256 |
F4V73_RS16555 |
130389 |
131498 |
-1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Morganella psychrotolerans |
19 |
group_3826 |
F4V73_RS17810 |
9529 |
9984 |
-1 |
|
deaminase |
Morganella psychrotolerans |
20 |
group_2256 |
PMI_RS00390 |
109413 |
110570 |
1 |
ribD |
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD |
Proteus mirabilis HI4320 |
21 |
group_1181 |
PMI_RS03170 |
699839 |
700723 |
-1 |
cdd |
cytidine deaminase |
Proteus mirabilis HI4320 |