Homologs in group_1181

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06810 FBDBKF_06810 57.8 Morganella morganii S1 cdd cytidine deaminase
EHELCC_04160 EHELCC_04160 57.8 Morganella morganii S2 cdd cytidine deaminase
NLDBIP_04160 NLDBIP_04160 57.8 Morganella morganii S4 cdd cytidine deaminase
LHKJJB_09990 LHKJJB_09990 57.8 Morganella morganii S3 cdd cytidine deaminase
HKOGLL_08985 HKOGLL_08985 57.8 Morganella morganii S5 cdd cytidine deaminase
F4V73_RS00950 F4V73_RS00950 59.9 Morganella psychrotolerans cdd cytidine deaminase

Distribution of the homologs in the orthogroup group_1181

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1181

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4ESY3 0.0 612 100 0 294 3 cdd Cytidine deaminase Proteus mirabilis (strain HI4320)
B1JPZ5 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TKN7 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pestis (strain Pestoides F)
Q1CGT5 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R1B9 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pestis bv. Antiqua (strain Angola)
Q8ZG08 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pestis
Q1C9U7 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FJK3 3.1e-138 395 66 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q66C79 1.33e-137 393 65 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype I (strain IP32953)
B2JZJ6 1.33e-137 393 65 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A8GC32 5.03e-130 374 62 0 294 3 cdd Cytidine deaminase Serratia proteamaculans (strain 568)
B5FMZ9 2.4e-127 367 63 1 294 3 cdd Cytidine deaminase Salmonella dublin (strain CT_02021853)
B5EYN3 1.64e-125 362 64 1 294 3 cdd Cytidine deaminase Salmonella agona (strain SL483)
Q7N6K3 2.25e-125 362 61 0 294 3 cdd Cytidine deaminase Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B5BE52 2.7e-125 362 63 1 294 3 cdd Cytidine deaminase Salmonella paratyphi A (strain AKU_12601)
Q5PE68 2.7e-125 362 63 1 294 3 cdd Cytidine deaminase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B2VIF3 4.11e-125 362 61 1 294 3 cdd Cytidine deaminase Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q8Z5A8 5.81e-125 361 63 1 294 3 cdd Cytidine deaminase Salmonella typhi
B4SY15 7.48e-125 361 63 1 294 3 cdd Cytidine deaminase Salmonella newport (strain SL254)
Q8ZNM0 8.62e-125 360 63 1 294 3 cdd Cytidine deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
C0Q0V4 8.62e-125 360 63 1 294 3 cdd Cytidine deaminase Salmonella paratyphi C (strain RKS4594)
A9N6L3 8.62e-125 360 63 1 294 3 cdd Cytidine deaminase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4TAK5 8.62e-125 360 63 1 294 3 cdd Cytidine deaminase Salmonella heidelberg (strain SL476)
B5RC22 8.62e-125 360 63 1 294 3 cdd Cytidine deaminase Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5R153 8.62e-125 360 63 1 294 3 cdd Cytidine deaminase Salmonella enteritidis PT4 (strain P125109)
Q57MF5 1.2e-124 360 63 1 294 3 cdd Cytidine deaminase Salmonella choleraesuis (strain SC-B67)
Q32EM3 1.98e-124 360 63 1 294 3 cdd Cytidine deaminase Shigella dysenteriae serotype 1 (strain Sd197)
B4TNP0 2.44e-124 359 63 1 294 3 cdd Cytidine deaminase Salmonella schwarzengrund (strain CVM19633)
Q3Z062 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Shigella sonnei (strain Ss046)
P0ABF7 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Shigella flexneri
Q0T2Y0 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Shigella flexneri serotype 5b (strain 8401)
Q322V3 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Shigella boydii serotype 4 (strain Sb227)
B2TVV2 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B1LKP0 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain SMS-3-5 / SECEC)
B6I8J3 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain SE11)
P0ABF6 2.63e-124 359 63 1 294 1 cdd Cytidine deaminase Escherichia coli (strain K12)
A8A204 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O9:H4 (strain HS)
B1X7N2 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain K12 / DH10B)
C4ZSM3 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain K12 / MC4100 / BW2952)
B7M4Y8 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O8 (strain IAI1)
B7LA09 2.63e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain 55989 / EAEC)
Q1R9T0 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain UTI89 / UPEC)
B7NCH2 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8FFV3 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TFU8 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AD04 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O1:K1 / APEC
B7MXF5 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O81 (strain ED1a)
B7MF55 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UFF9 3.46e-124 359 63 1 294 3 cdd Cytidine deaminase Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A4WCI1 4.64e-124 358 63 1 294 3 cdd Cytidine deaminase Enterobacter sp. (strain 638)
B7NMA8 6.17e-124 358 63 1 294 3 cdd Cytidine deaminase Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7LVA3 7.76e-124 358 63 1 294 3 cdd Cytidine deaminase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A7ZNW5 2.24e-123 357 63 1 294 3 cdd Cytidine deaminase Escherichia coli O139:H28 (strain E24377A / ETEC)
B1IYC6 2.29e-123 357 63 1 294 3 cdd Cytidine deaminase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B5YW75 5.43e-123 356 63 1 294 3 cdd Cytidine deaminase Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X648 5.43e-123 356 63 1 294 3 cdd Cytidine deaminase Escherichia coli O157:H7
A8AE87 8.63e-122 353 63 1 294 3 cdd Cytidine deaminase Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A9MKS5 4.75e-121 351 62 1 294 3 cdd Cytidine deaminase Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5XP65 2.19e-120 349 62 1 294 3 cdd Cytidine deaminase Klebsiella pneumoniae (strain 342)
A6TBN1 7.14e-120 348 62 1 294 1 cdd Cytidine deaminase Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q2NUD2 2.64e-116 340 55 1 307 3 cdd Cytidine deaminase Sodalis glossinidius (strain morsitans)
C5BCM4 1.41e-115 337 60 2 292 3 cdd Cytidine deaminase Edwardsiella ictaluri (strain 93-146)
Q6D3B4 3.2e-109 321 57 0 290 3 cdd Cytidine deaminase Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A7MLJ4 2.11e-108 319 59 1 294 3 cdd Cytidine deaminase Cronobacter sakazakii (strain ATCC BAA-894)
C6DDS7 1.92e-107 317 56 0 290 3 cdd Cytidine deaminase Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q6LRI0 3.5e-106 313 52 0 284 3 cdd Cytidine deaminase Photobacterium profundum (strain SS9)
Q8DA31 1.56e-101 301 51 0 284 3 cdd Cytidine deaminase Vibrio vulnificus (strain CMCP6)
Q7MK48 1.68e-101 301 51 0 284 3 cdd Cytidine deaminase Vibrio vulnificus (strain YJ016)
A5F1V7 3.8e-99 295 52 1 274 3 cdd Cytidine deaminase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
C3LLS7 8.16e-99 295 52 1 274 3 cdd Cytidine deaminase Vibrio cholerae serotype O1 (strain M66-2)
Q9KSM5 8.16e-99 295 52 1 274 1 cdd Cytidine deaminase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q87Q52 1.84e-96 289 48 0 284 3 cdd Cytidine deaminase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7MVH6 7.43e-96 287 50 0 284 3 cdd Cytidine deaminase Vibrio campbellii (strain ATCC BAA-1116)
B7VPF1 1.09e-95 287 48 0 284 3 cdd Cytidine deaminase Vibrio atlanticus (strain LGP32)
Q5E4R6 3.12e-91 275 49 1 284 3 cdd Cytidine deaminase Aliivibrio fischeri (strain ATCC 700601 / ES114)
B5FEN2 1.1e-90 274 48 1 284 3 cdd Cytidine deaminase Aliivibrio fischeri (strain MJ11)
B0USP2 1.57e-89 271 53 1 270 3 cdd Cytidine deaminase Histophilus somni (strain 2336)
Q0I4X6 4.91e-89 270 53 1 270 3 cdd Cytidine deaminase Histophilus somni (strain 129Pt)
Q9CP11 1.36e-83 256 49 0 258 3 cdd Cytidine deaminase Pasteurella multocida (strain Pm70)
Q4QK60 3.42e-83 255 49 1 271 3 cdd Cytidine deaminase Haemophilus influenzae (strain 86-028NP)
A5UEI7 3.53e-83 255 49 1 271 3 cdd Cytidine deaminase Haemophilus influenzae (strain PittGG)
B0BQT2 3.8e-83 255 53 2 247 3 cdd Cytidine deaminase Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3GYC3 3.8e-83 255 53 2 247 3 cdd Cytidine deaminase Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3N1Z1 3.8e-83 255 53 2 247 3 cdd Cytidine deaminase Actinobacillus pleuropneumoniae serotype 5b (strain L20)
A0KJH4 4.74e-83 254 50 3 291 3 cdd Cytidine deaminase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A5UBV9 2.34e-82 253 49 1 271 3 cdd Cytidine deaminase Haemophilus influenzae (strain PittEE)
P44325 3.62e-82 252 50 0 252 3 cdd Cytidine deaminase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A4SNI2 4.77e-80 247 48 3 291 3 cdd Cytidine deaminase Aeromonas salmonicida (strain A449)
Q65RG8 1.6e-76 238 47 3 272 3 cdd Cytidine deaminase Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B8CR83 4.77e-74 231 43 1 294 3 cdd Cytidine deaminase Shewanella piezotolerans (strain WP3 / JCM 13877)
A6VLF5 1.68e-73 230 52 2 231 3 cdd Cytidine deaminase Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q083S7 1.79e-73 230 41 1 294 3 cdd Cytidine deaminase Shewanella frigidimarina (strain NCIMB 400)
B1KRC5 6.24e-73 229 43 1 294 3 cdd Cytidine deaminase Shewanella woodyi (strain ATCC 51908 / MS32)
Q7VMJ6 6.27e-73 229 46 4 268 3 cdd Cytidine deaminase Haemophilus ducreyi (strain 35000HP / ATCC 700724)
A8FWK2 1.6e-72 228 43 1 294 3 cdd Cytidine deaminase Shewanella sediminis (strain HAW-EB3)
A3QDC9 1.56e-71 225 44 1 294 3 cdd Cytidine deaminase Shewanella loihica (strain ATCC BAA-1088 / PV-4)
A9KXF0 5.09e-71 224 43 1 294 3 cdd Cytidine deaminase Shewanella baltica (strain OS195)
A6WLY5 5.09e-71 224 43 1 294 3 cdd Cytidine deaminase Shewanella baltica (strain OS185)
A3D392 5.09e-71 224 43 1 294 3 cdd Cytidine deaminase Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8EF35 5.09e-71 224 43 1 294 3 cdd Cytidine deaminase Shewanella baltica (strain OS223)
B0TQV3 1.82e-69 220 42 1 294 3 cdd Cytidine deaminase Shewanella halifaxensis (strain HAW-EB4)
A1RL10 9.53e-69 218 42 1 294 3 cdd Cytidine deaminase Shewanella sp. (strain W3-18-1)
A4Y5R0 9.53e-69 218 42 1 294 3 cdd Cytidine deaminase Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A0KYD1 1.57e-68 218 42 1 294 3 cdd Cytidine deaminase Shewanella sp. (strain ANA-3)
Q0HHI5 1.73e-68 218 42 1 294 3 cdd Cytidine deaminase Shewanella sp. (strain MR-4)
Q0HTT9 4.11e-68 216 42 1 294 3 cdd Cytidine deaminase Shewanella sp. (strain MR-7)
A1S723 1.98e-67 215 43 1 294 3 cdd Cytidine deaminase Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q8EDG1 5.96e-67 213 41 1 294 3 cdd Cytidine deaminase Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
A8H5H1 5.03e-65 209 40 1 294 3 cdd Cytidine deaminase Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
Q3IBX5 5.83e-49 167 42 4 225 3 cdd Cytidine deaminase Pseudoalteromonas translucida (strain TAC 125)
O65896 1.12e-44 156 35 5 271 1 CDA1 Cytidine deaminase 1 Arabidopsis thaliana
Q9SU87 1.64e-35 132 32 8 286 2 CDA7 Cytidine deaminase 7 Arabidopsis thaliana
Q9SU86 5.81e-35 130 32 7 251 3 CDA6 Cytidine deaminase 6 Arabidopsis thaliana
O65571 1.04e-31 123 31 10 303 2 CDA2 Cytidine deaminase 2 Arabidopsis thaliana
Q9S847 5.36e-28 110 32 7 228 2 CDA3 Cytidine deaminase 3 Arabidopsis thaliana
Q9XEX4 3.37e-26 107 32 7 241 3 CDA8 Cytidine deaminase 8 Arabidopsis thaliana
Q9S7L8 3.62e-26 108 32 8 242 3 CDA5 Cytidine deaminase 5 Arabidopsis thaliana
Q9S789 1.83e-20 92 31 9 239 3 CDA9 Probable inactive cytidine deaminase 9 Arabidopsis thaliana
P32320 3.48e-12 66 35 3 119 1 CDA Cytidine deaminase Homo sapiens
Q09190 1.67e-11 63 35 4 113 3 pcd1 Putative cytidine deaminase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9S7S2 8.61e-11 64 26 6 227 2 CDA4 Probable inactive cytidine deaminase 4 Arabidopsis thaliana
P56389 1.9e-10 61 36 4 119 1 Cda Cytidine deaminase Mus musculus
P9WPH3 7.79e-09 56 38 4 117 1 cdd Cytidine deaminase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPH2 7.79e-09 56 38 4 117 3 cdd Cytidine deaminase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q06549 3.19e-08 55 32 4 118 1 CDD1 Cytidine deaminase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q06549 0.000403 43 34 0 61 1 CDD1 Cytidine deaminase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P19079 3.5e-07 52 31 5 116 1 cdd Cytidine deaminase Bacillus subtilis (strain 168)
P19079 0.000407 43 39 0 48 1 cdd Cytidine deaminase Bacillus subtilis (strain 168)
Q9KD53 3.68e-07 51 35 5 117 3 cdd Cytidine deaminase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q54I82 1.11e-05 47 31 4 113 3 cda Probable cytidine deaminase Dictyostelium discoideum
Q9S3M0 1.3e-05 47 31 4 118 3 cdd Cytidine deaminase Sporosarcina psychrophila

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03170
Feature type CDS
Gene cdd
Product cytidine deaminase
Location 699839 - 700723 (strand: -1)
Length 885 (nucleotides) / 294 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1181
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region
PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0295 Nucleotide transport and metabolism (F) F Cytidine deaminase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01489 cytidine deaminase [EC:3.5.4.5] Pyrimidine metabolism
Drug metabolism - other enzymes
Metabolic pathways
Nucleotide metabolism		 -

Protein Sequence

MHTRFQAIWSDLSPQLQQALTPYLEQDEFPAMFTAEQVNALKTQLQCNDDELALALLPVAAACAVTPISHFNVGAIARGESGHFYFGANMEFAGAPLQQTVHAEQSAVTHAWLRGESRLVAITVNYTPCGHCRQFMNELNSGTHIAIHLPGRKVATLGDYLPDSFGPKDLNITTLLMDKVNHGYQIDNTSQLAQQALQAINRSHAPYSHSHSGIAVQMKSGKIFQGSYAENAAFNPSMPPLQAALIALNMAGENVMDIESAILIEKADSLLTQWDATQATLTALGCRQIQRVTL

Flanking regions ( +/- flanking 50bp)

AAAGATGCCTAAAATCTTACAATAGCAGAAGATTAATGGGAGACACCTATATGCATACTCGTTTTCAGGCAATTTGGTCAGATTTATCCCCTCAATTACAACAAGCACTTACGCCTTATCTTGAGCAGGATGAATTTCCGGCAATGTTCACTGCAGAACAAGTTAATGCGTTAAAAACACAGTTACAATGTAATGATGATGAGTTAGCCCTCGCATTACTGCCTGTTGCAGCCGCTTGTGCTGTGACACCTATCTCTCATTTTAATGTGGGTGCCATTGCTCGTGGTGAAAGCGGTCACTTCTATTTTGGGGCAAATATGGAGTTTGCTGGCGCCCCATTACAACAAACGGTACACGCAGAGCAAAGTGCGGTTACACATGCTTGGTTACGCGGTGAGTCTCGTTTAGTTGCCATCACAGTTAACTATACCCCTTGTGGTCATTGTCGTCAGTTTATGAACGAACTAAATAGCGGCACTCATATTGCAATCCATCTCCCAGGCCGAAAAGTGGCAACCTTAGGTGACTACTTACCTGATAGCTTTGGCCCTAAAGATCTCAATATCACTACCCTACTGATGGATAAAGTTAATCACGGTTATCAAATAGATAACACTAGCCAACTGGCACAACAGGCACTACAAGCAATAAATCGTAGTCATGCCCCTTACAGCCATTCTCACAGTGGTATTGCTGTACAGATGAAAAGCGGTAAGATCTTTCAAGGCAGTTATGCTGAAAATGCCGCATTCAATCCTAGTATGCCACCATTACAAGCGGCACTTATTGCATTAAATATGGCGGGTGAAAATGTTATGGATATTGAGTCTGCAATATTAATTGAAAAAGCAGACAGCCTATTAACTCAGTGGGATGCCACACAAGCAACATTAACAGCTTTAGGTTGCCGCCAAATACAGCGTGTCACTTTGTAACATTTTTTAACTTATACCGTTAAATTGTCCTCATAAAAAAGCATCAGCAT