PF00374


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00374, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00374
Description Nickel-dependent hydrogenase

Occurence in the database

PF00374 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_792 FBDBKF_03715 144443 146176 -1 hycE Ni,Fe-hydrogenase III component G Morganella morganii S1
1 group_2406 FBDBKF_19280 3809 5512 1 hybC hydrogenase 2 large subunit Morganella morganii S1
2 group_792 EHELCC_06820 100927 102660 1 hycE Ni,Fe-hydrogenase III component G Morganella morganii S2
3 group_2406 EHELCC_07565 250900 252603 1 hybC hydrogenase 2 large subunit Morganella morganii S2
4 group_792 NLDBIP_07145 100800 102533 1 hycE Ni,Fe-hydrogenase III component G Morganella morganii S4
5 group_2406 NLDBIP_07890 250773 252476 1 hybC hydrogenase 2 large subunit Morganella morganii S4
6 group_792 LHKJJB_06680 64546 66279 1 hycE Ni,Fe-hydrogenase III component G Morganella morganii S3
7 group_2406 LHKJJB_07425 214519 216222 1 hybC hydrogenase 2 large subunit Morganella morganii S3
8 group_2406 HKOGLL_03505 17165 18868 -1 hybC hydrogenase 2 large subunit Morganella morganii S5
9 group_792 HKOGLL_04250 167108 168841 -1 hycE Ni,Fe-hydrogenase III component G Morganella morganii S5
10 group_792 F4V73_RS11155 371260 372993 1 hydrogenase large subunit Morganella psychrotolerans
11 group_2406 F4V73_RS12040 562519 564222 1 hybC hydrogenase 2 large subunit Morganella psychrotolerans
12 group_2406 PMI_RS00165 56675 58378 1 hybC hydrogenase 2 large subunit Proteus mirabilis HI4320
13 group_792 PMI_RS12470 2763797 2765530 -1 hydrogenase large subunit Proteus mirabilis HI4320