Homologs in group_2406

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19280 FBDBKF_19280 92.8 Morganella morganii S1 hybC hydrogenase 2 large subunit
EHELCC_07565 EHELCC_07565 92.8 Morganella morganii S2 hybC hydrogenase 2 large subunit
NLDBIP_07890 NLDBIP_07890 92.8 Morganella morganii S4 hybC hydrogenase 2 large subunit
LHKJJB_07425 LHKJJB_07425 92.8 Morganella morganii S3 hybC hydrogenase 2 large subunit
HKOGLL_03505 HKOGLL_03505 92.8 Morganella morganii S5 hybC hydrogenase 2 large subunit
PMI_RS00165 PMI_RS00165 70.7 Proteus mirabilis HI4320 hybC hydrogenase 2 large subunit

Distribution of the homologs in the orthogroup group_2406

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2406

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACE2 0.0 1009 83 0 567 3 hybC Hydrogenase-2 large chain Shigella flexneri
P0ACE0 0.0 1009 83 0 567 1 hybC Hydrogenase-2 large chain Escherichia coli (strain K12)
P0ACE1 0.0 1009 83 0 567 3 hybC Hydrogenase-2 large chain Escherichia coli O157:H7
P18636 1.31e-169 497 45 11 591 3 hupB Uptake hydrogenase large subunit Rhizobium leguminosarum bv. viciae
P12636 9.79e-169 494 45 11 591 3 hupB Uptake hydrogenase large subunit Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P15284 7.39e-164 482 44 14 595 3 hupB Uptake hydrogenase large subunit Rhodobacter capsulatus
P12944 9.66e-162 475 43 9 569 1 hydB Periplasmic [NiFe] hydrogenase large subunit Megalodesulfovibrio gigas
P0ACD9 4.26e-161 475 43 12 591 3 hyaB Hydrogenase-1 large chain Shigella flexneri
P0ACD8 4.26e-161 475 43 12 591 1 hyaB Hydrogenase-1 large chain Escherichia coli (strain K12)
P21949 1.04e-160 474 44 14 594 3 hoxG Uptake hydrogenase large subunit Azotobacter vinelandii
P21852 9.56e-157 463 43 11 569 1 hydB Periplasmic [NiFe] hydrogenase large subunit Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
P31891 1.51e-156 464 43 15 607 1 hoxG Uptake hydrogenase large subunit Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q46046 1.86e-155 461 41 11 593 3 hyaB Hydrogenase-1 large chain Citrobacter freundii
P18188 3.07e-152 451 42 11 571 1 hydB Periplasmic [NiFe] hydrogenase large subunit Solidesulfovibrio fructosivorans
P17632 6.96e-152 452 42 14 607 3 hupB Uptake hydrogenase large subunit Rubrivivax gelatinosus
O33406 4.67e-150 447 42 13 592 1 hoxL Uptake hydrogenase large subunit Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
P31883 2.83e-149 444 41 10 588 1 hydB Quinone-reactive Ni/Fe-hydrogenase large chain Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P33374 2.42e-146 438 41 13 610 3 hupL Uptake hydrogenase large subunit Alcaligenes hydrogenophilus
P18191 1.45e-140 422 41 11 591 3 hupL Uptake hydrogenase large subunit Azotobacter chroococcum mcd 1
P13065 2.76e-89 287 33 15 569 1 None Periplasmic [NiFeSe] hydrogenase large subunit Desulfomicrobium baculatum
F1SVF8 5.17e-52 190 27 23 629 2 vhtA F420 non-reducing hydrogenase II large subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q50249 1.15e-51 189 28 22 631 2 vhoA F420 non-reducing hydrogenase I large subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
P19496 9.97e-23 103 47 3 119 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P19496 6.1e-10 65 22 15 377 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q00404 1.24e-17 89 31 3 159 2 vhcA F420-non-reducing hydrogenase vhc subunit A Methanococcus voltae
Q00404 0.001 45 32 2 86 2 vhcA F420-non-reducing hydrogenase vhc subunit A Methanococcus voltae
Q58592 1.69e-17 88 36 1 115 3 vhuA F420-non-reducing hydrogenase vhu subunit A Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q00407 4.13e-17 87 38 1 115 3 vhuA F420-non-reducing hydrogenase vhu subunit A Methanococcus voltae
Q49179 1.73e-16 85 36 2 119 3 mvhA F420-non-reducing hydrogenase subunit A Methanothermus fervidus
P60227 3.91e-14 78 36 2 118 1 mvhA F420-non-reducing hydrogenase subunit A Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
Q50783 4.08e-14 78 36 2 118 3 mvhA F420-non-reducing hydrogenase subunit A Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q60338 5.65e-14 77 41 2 97 3 frhA Coenzyme F420 hydrogenase subunit alpha Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P80489 7.46e-14 77 35 2 109 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanosarcina barkeri (strain Fusaro / DSM 804)
P80489 0.000101 48 24 10 229 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanosarcina barkeri (strain Fusaro / DSM 804)
P84625 6.19e-12 71 32 2 128 1 mvhA F420-non-reducing hydrogenase iron-sulfur subunit A Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)
Q00390 6.59e-11 68 32 3 119 3 frhA Coenzyme F420 hydrogenase subunit alpha Methanococcus voltae
P22320 7.96e-11 68 35 3 113 1 hoxH NAD-reducing hydrogenase HoxS subunit beta Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
E7FHC4 2.95e-09 62 36 1 93 1 shyA Sulfhydrogenase 2 subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
E7FHC4 0.000109 48 32 3 88 1 shyA Sulfhydrogenase 2 subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q58433 4.33e-08 59 26 4 129 3 MJ1027 Uncharacterized protein MJ1027 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P16431 2.74e-07 57 31 2 95 1 hycE Formate hydrogenlyase subunit 5 Escherichia coli (strain K12)
P77329 3.3e-07 57 31 2 95 1 hyfG Hydrogenase-4 component G Escherichia coli (strain K12)
E7FI44 7.01e-07 55 29 1 121 1 hydA Sulfhydrogenase 1 subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q57935 5.98e-06 52 26 2 102 3 MJ0515 Uncharacterized protein MJ0515 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P40597 2.13e-05 50 34 2 85 4 hoxV Hydrogenase expression/formation protein HoxV Azotobacter vinelandii
P31878 2.45e-05 50 34 2 85 3 hupK Hydrogenase expression/formation protein HupK Azotobacter vinelandii
Q43959 3.55e-05 49 28 3 117 3 hupV Hydrogenase expression/formation protein HupV Azotobacter chroococcum mcd 1
B2UV27 0.00014 48 31 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter pylori (strain Shi470)
B5Z8Q8 0.000171 47 31 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter pylori (strain G27)
Q9ZJW4 0.000174 47 31 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter pylori (strain J99 / ATCC 700824)
B6JNA3 0.000174 47 31 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter pylori (strain P12)
Q1CRZ8 0.000188 47 31 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter pylori (strain HPAG1)
O25853 0.0002 47 31 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter pylori (strain ATCC 700392 / 26695)
Q8U0Z6 0.000394 47 29 1 74 1 mbhL Membrane-bound hydrogenase subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q17Z55 0.000581 46 30 2 112 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter acinonychis (strain Sheeba)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12040
Feature type CDS
Gene hybC
Product hydrogenase 2 large subunit
Location 562519 - 564222 (strand: 1)
Length 1704 (nucleotides) / 567 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2406
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00374 Nickel-dependent hydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0374 Energy production and conversion (C) C Ni,Fe-hydrogenase I large subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06281 hydrogenase large subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Protein Sequence

MSQRITIDPVTRIEGHLRIDCEIDNGMVTKAWASGTMWRGMEKIVKGKDPRDAWMILQRICGVCTTTHALASVRAVENALNLDVPVNAQHIRNIILAAHTTHDHIVHFYQLSALDWVDITSVLKADPAKASAMLNGVSSWSLNSTQEFTRVQEKIKTLVESGQLGIFANGYWGHPAMQLPPEVNLIAVAHYLHALECQRDANRIVALLGGKTPHIQNLAVGGVANPINLDGLGTLNLERLMYIKSFIDKLNDFVEQVYKVDTAVIAAFYPQWFETGQGAVNYLSTPEFPTDGKNGSFLFPGGYIENADLSTFRPITSQADPFLLEGIQESAKHAWYQDEEPQKPWEGTTNPNYTGWDPDGKYSWVKSPTLYGKTVEVGPLANMFCKLAAKHEGTQEKLNEIIAVYTQLTGKPLEVKQLHSTLGRIIGRTVHCCELQAVLQHQYAALIANIGTGDHITYVKPDIPETGVIKGVGFLEAPRGMLSHWVVIKDGVIENYQAVVPSTWNCGPRNNNDVVGPYEQSLVGLKIADPEKPLEVVRTIHSFDPCMACAVHIVDIDGNETVSVKVL

Flanking regions ( +/- flanking 50bp)

CCTCCTTTAAAAAAATCATCTGTTCACAATTATCATGAGGCGAGCAAGTCATGAGCCAGAGAATTACGATTGATCCGGTCACCCGTATCGAAGGGCATTTACGCATCGACTGTGAAATCGATAACGGCATGGTCACCAAAGCCTGGGCTTCCGGCACCATGTGGCGTGGTATGGAAAAAATTGTGAAGGGCAAAGATCCGCGTGATGCCTGGATGATCCTGCAACGCATCTGCGGCGTCTGCACAACCACGCATGCGCTGGCCTCTGTGCGCGCAGTGGAAAATGCCCTCAATCTGGATGTGCCGGTGAATGCGCAGCATATCCGCAATATCATACTGGCGGCACACACCACTCATGACCATATTGTTCATTTTTATCAGCTGTCCGCGCTGGACTGGGTGGATATCACCTCGGTACTGAAAGCCGATCCGGCGAAAGCCTCGGCGATGCTTAACGGCGTATCAAGCTGGTCGCTGAACAGTACGCAGGAATTCACCCGGGTGCAGGAAAAAATCAAAACGCTGGTGGAGAGCGGGCAACTGGGTATTTTTGCCAACGGCTACTGGGGACACCCGGCGATGCAGTTACCGCCGGAAGTCAATCTGATCGCCGTGGCGCACTACTTACACGCGCTGGAGTGTCAGCGCGATGCCAACCGCATTGTGGCGCTGTTGGGCGGAAAAACTCCGCATATTCAGAATCTTGCTGTCGGCGGTGTGGCGAATCCGATCAACCTTGACGGACTCGGCACTCTGAATCTTGAGCGCCTGATGTACATCAAATCATTCATTGATAAGCTCAATGATTTCGTCGAGCAGGTTTATAAAGTGGATACTGCCGTGATCGCGGCATTCTATCCGCAGTGGTTTGAAACCGGGCAGGGCGCGGTGAACTATCTGAGCACCCCTGAATTCCCGACTGACGGCAAAAACGGCAGTTTCCTTTTCCCCGGCGGTTACATTGAAAACGCAGATTTGAGCACCTTCCGCCCGATCACCTCTCAGGCAGATCCTTTCCTGCTCGAGGGGATTCAGGAGAGCGCAAAACACGCCTGGTATCAGGATGAAGAACCGCAAAAGCCGTGGGAAGGCACAACCAACCCGAATTACACCGGCTGGGATCCTGACGGCAAATATTCCTGGGTAAAATCGCCGACACTGTACGGTAAAACCGTGGAAGTGGGACCGCTGGCAAACATGTTCTGCAAACTGGCGGCAAAACATGAAGGCACGCAGGAAAAACTGAATGAAATTATTGCGGTTTATACACAATTAACCGGCAAACCATTGGAAGTGAAACAATTACACTCCACTCTCGGTCGTATTATCGGGCGCACAGTACACTGCTGTGAATTGCAGGCGGTTCTGCAACATCAGTATGCCGCGCTGATTGCCAACATCGGCACCGGCGACCATATTACCTATGTGAAACCGGATATCCCGGAAACCGGCGTCATCAAAGGCGTGGGCTTCCTGGAAGCACCGCGCGGGATGTTATCGCACTGGGTGGTTATCAAAGATGGTGTGATTGAAAACTATCAGGCGGTTGTGCCGTCCACCTGGAACTGCGGACCACGCAATAATAATGATGTGGTCGGGCCGTATGAACAGTCACTGGTCGGGCTGAAAATTGCCGATCCGGAGAAACCGCTGGAAGTGGTGCGGACTATCCATTCATTTGACCCTTGTATGGCGTGTGCGGTACATATTGTTGATATCGATGGTAACGAAACTGTCTCAGTGAAGGTGTTGTAATGCGGATACTGGTGCTGGGTGTCGGTAATATTCTGCTGACAGATGAAGCG