Orthogroup:group_2439


Homologs in group_2439

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19280 FBDBKF_19280 Morganella morganii S1 hybC hydrogenase 2 large subunit
EHELCC_07565 EHELCC_07565 Morganella morganii S2 hybC hydrogenase 2 large subunit
NLDBIP_07890 NLDBIP_07890 Morganella morganii S4 hybC hydrogenase 2 large subunit
LHKJJB_07425 LHKJJB_07425 Morganella morganii S3 hybC hydrogenase 2 large subunit
HKOGLL_03505 HKOGLL_03505 Morganella morganii S5 hybC hydrogenase 2 large subunit
F4V73_RS12040 F4V73_RS12040 Morganella psychrotolerans hybC hydrogenase 2 large subunit
PMI_RS00165 PMI_RS00165 Proteus mirabilis HI4320 hybC hydrogenase 2 large subunit

Distribution of group_2439 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2439 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2439

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_2439.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hybC 7

Product

# Product Occurence
1 hydrogenase 2 large subunit 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0374 7 C Energy production and conversion (C) Ni,Fe-hydrogenase I large subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06281 7 hydrogenase large subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00374 7 Nickel-dependent hydrogenase

Annotations of the 64 SwissProt hits

Annotation Number of occurrences
Carbon monoxide-induced hydrogenase 1
Coenzyme F420 hydrogenase subunit alpha 4
F420 non-reducing hydrogenase I large subunit 1
F420 non-reducing hydrogenase II large subunit 1
F420-non-reducing hydrogenase iron-sulfur subunit A 1
F420-non-reducing hydrogenase subunit A 3
F420-non-reducing hydrogenase vhc subunit A 1
F420-non-reducing hydrogenase vhu subunit A 2
Formate hydrogenlyase subunit 5 1
Hydrogenase expression/formation protein HoxV 1
Hydrogenase expression/formation protein HupK 2
Hydrogenase expression/formation protein HupV 1
Hydrogenase-1 large chain 3
Hydrogenase-2 large chain 3
Hydrogenase-4 component G 1
Membrane-bound hydrogenase subunit alpha 1
NAD-reducing hydrogenase HoxS subunit beta 1
NADH-quinone oxidoreductase subunit D 17
Periplasmic [NiFeSe] hydrogenase large subunit 1
Periplasmic [NiFe] hydrogenase large subunit 3
Quinone-reactive Ni/Fe-hydrogenase large chain 1
Sulfhydrogenase 1 subunit alpha 1
Sulfhydrogenase 2 subunit alpha 1
Uncharacterized protein MJ0515 1
Uncharacterized protein MJ0727 1
Uncharacterized protein MJ1027 1
Uptake hydrogenase large subunit 9

Protein length

Unique protein length 567

Protein length distribution