Orthogroup:group_2439


Homologs in group_2439

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19940 FBDBKF_19940 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_07675 EHELCC_07675 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_08000 NLDBIP_08000 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_06265 LHKJJB_06265 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_19120 HKOGLL_19120 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS02425 F4V73_RS02425 Morganella psychrotolerans - CerR family C-terminal domain-containing protein
PMI_RS09200 PMI_RS09200 Proteus mirabilis HI4320 - CerR family C-terminal domain-containing protein

Distribution of group_2439 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2439 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2439

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2439.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 acrR 5
2 - 2

Product

# Product Occurence
1 DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA 5
2 CerR family C-terminal domain-containing protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 7 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K23777 7 TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 7 Bacterial regulatory proteins, tetR family
PF09209 7 HTH-type transcriptional dual regulator CecR, C-terminal domain

Annotations of the 10 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional dual regulator CecR 2
HTH-type transcriptional regulator MtrR 1
HTH-type transcriptional regulator RutR 4
HTH-type transcriptional regulator SrpR 1
Probable HTH-type transcriptional regulator YttP 1
Uncharacterized HTH-type transcriptional regulator TtgW 1

Protein length

Min length 220
Max length 224
Mean length (sd) 220.6 (1.5)
Median length 220.0

Protein length distribution