Homologs in group_2406

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19280 FBDBKF_19280 70.0 Morganella morganii S1 hybC hydrogenase 2 large subunit
EHELCC_07565 EHELCC_07565 70.0 Morganella morganii S2 hybC hydrogenase 2 large subunit
NLDBIP_07890 NLDBIP_07890 70.0 Morganella morganii S4 hybC hydrogenase 2 large subunit
LHKJJB_07425 LHKJJB_07425 70.0 Morganella morganii S3 hybC hydrogenase 2 large subunit
HKOGLL_03505 HKOGLL_03505 70.0 Morganella morganii S5 hybC hydrogenase 2 large subunit
F4V73_RS12040 F4V73_RS12040 70.7 Morganella psychrotolerans hybC hydrogenase 2 large subunit

Distribution of the homologs in the orthogroup group_2406

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2406

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACE2 0.0 870 72 0 567 3 hybC Hydrogenase-2 large chain Shigella flexneri
P0ACE0 0.0 870 72 0 567 1 hybC Hydrogenase-2 large chain Escherichia coli (strain K12)
P0ACE1 0.0 870 72 0 567 3 hybC Hydrogenase-2 large chain Escherichia coli O157:H7
P12636 3.47e-161 475 44 11 592 3 hupB Uptake hydrogenase large subunit Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P18636 2.26e-160 473 43 12 592 3 hupB Uptake hydrogenase large subunit Rhizobium leguminosarum bv. viciae
P21852 9.52e-156 460 43 10 570 1 hydB Periplasmic [NiFe] hydrogenase large subunit Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
P21949 1.31e-154 459 43 12 594 3 hoxG Uptake hydrogenase large subunit Azotobacter vinelandii
P0ACD9 3.1e-152 452 41 10 591 3 hyaB Hydrogenase-1 large chain Shigella flexneri
P0ACD8 3.1e-152 452 41 10 591 1 hyaB Hydrogenase-1 large chain Escherichia coli (strain K12)
P12944 3.39e-152 451 42 9 571 1 hydB Periplasmic [NiFe] hydrogenase large subunit Megalodesulfovibrio gigas
Q46046 5.74e-152 452 41 11 591 3 hyaB Hydrogenase-1 large chain Citrobacter freundii
P31883 1.12e-151 450 42 13 591 1 hydB Quinone-reactive Ni/Fe-hydrogenase large chain Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P31891 9.28e-149 444 42 15 609 1 hoxG Uptake hydrogenase large subunit Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P15284 2.39e-148 442 41 12 595 3 hupB Uptake hydrogenase large subunit Rhodobacter capsulatus
P18188 7.71e-147 437 42 11 567 1 hydB Periplasmic [NiFe] hydrogenase large subunit Solidesulfovibrio fructosivorans
P17632 1.07e-145 436 41 13 607 3 hupB Uptake hydrogenase large subunit Rubrivivax gelatinosus
O33406 6.36e-142 426 40 10 592 1 hoxL Uptake hydrogenase large subunit Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
P33374 1.37e-137 416 40 14 612 3 hupL Uptake hydrogenase large subunit Alcaligenes hydrogenophilus
P18191 6.24e-136 410 40 9 591 3 hupL Uptake hydrogenase large subunit Azotobacter chroococcum mcd 1
P13065 2.85e-76 253 31 18 570 1 None Periplasmic [NiFeSe] hydrogenase large subunit Desulfomicrobium baculatum
F1SVF8 4.18e-49 182 27 25 641 2 vhtA F420 non-reducing hydrogenase II large subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q50249 5.01e-49 182 27 24 638 2 vhoA F420 non-reducing hydrogenase I large subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
P19496 1.64e-21 100 37 4 161 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P19496 1.35e-07 57 21 10 377 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58592 9.39e-20 95 35 2 159 3 vhuA F420-non-reducing hydrogenase vhu subunit A Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q00407 1e-19 95 39 3 146 3 vhuA F420-non-reducing hydrogenase vhu subunit A Methanococcus voltae
Q00404 1.01e-17 89 38 1 115 2 vhcA F420-non-reducing hydrogenase vhc subunit A Methanococcus voltae
Q49179 2.73e-17 88 26 4 230 3 mvhA F420-non-reducing hydrogenase subunit A Methanothermus fervidus
P84625 3.32e-14 79 34 2 126 1 mvhA F420-non-reducing hydrogenase iron-sulfur subunit A Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)
Q50783 1.57e-13 76 33 2 118 3 mvhA F420-non-reducing hydrogenase subunit A Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P60227 1.64e-13 76 33 2 118 1 mvhA F420-non-reducing hydrogenase subunit A Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
P80489 1.93e-13 76 33 1 109 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanosarcina barkeri (strain Fusaro / DSM 804)
P80489 3.35e-07 56 27 7 193 1 frhA Coenzyme F420 hydrogenase subunit alpha Methanosarcina barkeri (strain Fusaro / DSM 804)
Q60338 9.46e-13 73 42 2 97 3 frhA Coenzyme F420 hydrogenase subunit alpha Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q00390 1.13e-12 73 34 2 119 3 frhA Coenzyme F420 hydrogenase subunit alpha Methanococcus voltae
P22320 4.15e-11 68 31 2 118 1 hoxH NAD-reducing hydrogenase HoxS subunit beta Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
E7FHC4 4.06e-10 65 26 10 286 1 shyA Sulfhydrogenase 2 subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
E7FHC4 3.54e-05 50 24 8 206 1 shyA Sulfhydrogenase 2 subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q58433 1.87e-07 57 26 4 129 3 MJ1027 Uncharacterized protein MJ1027 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P77329 1.23e-06 55 29 3 96 1 hyfG Hydrogenase-4 component G Escherichia coli (strain K12)
E7FI44 1.4e-06 54 27 2 145 1 hydA Sulfhydrogenase 1 subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q57935 2.81e-06 53 30 2 99 3 MJ0515 Uncharacterized protein MJ0515 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P16431 9.32e-06 52 28 3 96 1 hycE Formate hydrogenlyase subunit 5 Escherichia coli (strain K12)
Q9K1C0 3.91e-05 50 29 4 138 3 nuoD NADH-quinone oxidoreductase subunit D Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q7VFS5 5.69e-05 49 31 1 92 3 nuoD NADH-quinone oxidoreductase subunit D Helicobacter hepaticus (strain ATCC 51449 / 3B1)
A1INN7 7.79e-05 48 29 4 138 3 nuoD NADH-quinone oxidoreductase subunit D Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
B4RPI1 8.58e-05 48 29 4 138 3 nuoD NADH-quinone oxidoreductase subunit D Neisseria gonorrhoeae (strain NCCP11945)
Q5F618 8.58e-05 48 29 4 138 3 nuoD NADH-quinone oxidoreductase subunit D Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
A6QCG0 9.61e-05 48 28 2 120 3 nuoD NADH-quinone oxidoreductase subunit D Sulfurovum sp. (strain NBC37-1)
Q8U0Z6 0.000103 48 35 0 53 1 mbhL Membrane-bound hydrogenase subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q43959 0.000166 47 29 2 84 3 hupV Hydrogenase expression/formation protein HupV Azotobacter chroococcum mcd 1
A8Z6E5 0.000443 46 27 2 116 3 nuoD NADH-quinone oxidoreductase subunit D Campylobacter concisus (strain 13826)
A9M3D9 0.000446 46 28 4 138 3 nuoD NADH-quinone oxidoreductase subunit D Neisseria meningitidis serogroup C (strain 053442)
A1KRS5 0.00045 46 28 4 138 3 nuoD NADH-quinone oxidoreductase subunit D Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)
P31895 0.000478 46 31 3 100 4 cooH Carbon monoxide-induced hydrogenase Rhodospirillum rubrum
A7GW67 0.000591 46 28 2 116 3 nuoD NADH-quinone oxidoreductase subunit D Campylobacter curvus (strain 525.92)
P40597 0.000629 45 32 2 84 4 hoxV Hydrogenase expression/formation protein HoxV Azotobacter vinelandii
P28153 0.000635 45 28 4 125 3 hupK Hydrogenase expression/formation protein HupK Rhizobium leguminosarum bv. viciae
P31878 0.000647 45 32 2 84 3 hupK Hydrogenase expression/formation protein HupK Azotobacter vinelandii

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00165
Feature type CDS
Gene hybC
Product hydrogenase 2 large subunit
Location 56675 - 58378 (strand: 1)
Length 1704 (nucleotides) / 567 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2406
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00374 Nickel-dependent hydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0374 Energy production and conversion (C) C Ni,Fe-hydrogenase I large subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06281 hydrogenase large subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Protein Sequence

MSQRITIDPITRIEGHLRVDCEIDNGKVVKAWSSGTMWRGMEEILKGSDPRDAWIIVQRICGVCTTVHAIASVRAVEDALGMDIPVNAQYIRNLILASHIIHDHIVHFYQLSAMDWVDITAALQADPEKASAMLKGVSQWQLNSAEEFRKVQKKIQDLVDSGQLGIFANGYWGHSAMKLPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVGGVANPINLDAPNVLNLERLMYVKHFIDNLGDFIEQVYKVDTAIFAAYYPEWLKIGKGANYYLSVPELPINGNNTEFLLSGGYMEGVDFSTYRPIKDWKDQNLKDGIEESGKHAWYEDDEPLKPWEGLTRPKYTGWDENNKYSWVKSPTFYGKPVEVGTLAWLVCGLAGKHEGTVKHYNEVNQIYTKLTGQTLVTEQLESTWGRIIGRTVHACVLQDSLNFLWQSLVDNIGRGDTASFIKPEFEPGKEYRGVGFEEASRGMLSHWIVFKDGKITNYQAVVPSTWNAGPRNFNDEPGPYELSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHMVDLTGKELSKVKVL

Flanking regions ( +/- flanking 50bp)

CCAGCACAAACAGAGTCAAATATACAATTAAAAAAGGCTGAGGTTAAATCATGAGCCAACGCATTACTATTGATCCTATTACCCGTATTGAAGGGCATTTACGCGTCGACTGTGAAATCGATAACGGAAAAGTCGTTAAAGCTTGGTCTTCCGGTACTATGTGGCGTGGAATGGAGGAGATCCTAAAAGGAAGCGATCCTCGTGATGCATGGATTATTGTGCAACGCATTTGTGGTGTTTGTACAACGGTTCACGCAATAGCCTCAGTACGTGCTGTAGAAGATGCCTTAGGGATGGATATTCCGGTTAATGCTCAGTATATCCGTAACTTAATTCTGGCTTCTCACATTATTCATGACCATATCGTCCATTTCTATCAGTTGTCTGCGATGGATTGGGTTGATATTACGGCAGCATTACAGGCAGATCCTGAAAAAGCCTCAGCGATGCTTAAAGGGGTTTCTCAATGGCAATTGAACTCTGCTGAAGAGTTCAGAAAAGTGCAGAAGAAAATTCAAGATTTGGTTGATAGCGGTCAGTTAGGTATTTTCGCTAATGGTTACTGGGGTCACTCAGCCATGAAATTACCTCCTGAAGTGAACTTGATTGCGGTAGCCCACTATCTACAAGCATTGGAATGCCAGCGCGATGCAAACCGCATTGTGGCCGTGTTAGGGGGTAAAACACCGCATATTCAAAACTTAGCAGTGGGCGGTGTTGCTAACCCAATTAACCTTGATGCACCGAATGTTCTCAATTTAGAACGTTTAATGTATGTAAAACACTTTATTGATAACTTGGGTGATTTTATTGAACAGGTTTATAAAGTGGATACTGCTATTTTTGCTGCTTATTATCCAGAGTGGTTAAAAATCGGTAAAGGGGCTAATTACTACTTATCTGTGCCTGAATTGCCTATTAATGGCAATAATACTGAGTTTTTACTCTCAGGTGGCTATATGGAAGGCGTTGATTTTTCTACTTATCGTCCAATCAAAGATTGGAAAGATCAAAACCTGAAAGACGGCATTGAAGAGAGTGGTAAACACGCATGGTATGAAGATGATGAACCATTAAAACCATGGGAAGGTTTAACTCGTCCTAAATACACCGGTTGGGATGAAAATAATAAATACTCATGGGTTAAGTCACCCACATTTTACGGCAAACCTGTAGAAGTAGGTACTTTAGCATGGTTAGTGTGTGGTTTAGCGGGTAAACATGAAGGCACAGTAAAACACTATAACGAAGTTAATCAGATCTACACCAAATTAACCGGTCAAACCTTGGTGACAGAGCAGTTAGAGTCAACTTGGGGACGCATTATTGGTCGTACCGTTCATGCTTGTGTATTACAAGATTCGCTTAACTTCTTATGGCAATCACTGGTTGATAATATTGGCCGTGGAGATACTGCTTCCTTTATTAAACCTGAGTTTGAGCCGGGTAAAGAGTATCGTGGCGTCGGTTTTGAAGAGGCTTCGCGCGGTATGCTATCTCACTGGATAGTCTTTAAAGATGGCAAAATCACAAACTATCAGGCGGTTGTTCCTTCAACATGGAATGCGGGTCCTCGTAACTTTAATGATGAACCGGGTCCTTATGAGTTATCACTAGTGGGAACGCCGGTGGCTGATCCTAACAAACCTCTGGAAGTGGTAAGAACCATTCACTCTTTCGACCCATGTATGGCTTGTGCTGTGCATATGGTTGATTTAACAGGTAAAGAATTAAGTAAGGTGAAGGTATTGTAATGCGTACACTTGTCTTAGGTATTGGTAATTTATTACTAAGCGATGAAGGC