PF00324
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00324, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 35 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00324 |
Description |
Amino acid permease |
Occurence in the database
PF00324 is associated with 35 different proteins (see tab "Protein list" and "Profile") |
The 35 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_7 |
FBDBKF_00495 |
78213 |
79610 |
1 |
cycA |
D-serine/D-alanine/glycine transporter |
Morganella morganii S1 |
1 |
group_2711 |
FBDBKF_06745 |
11834 |
13186 |
-1 |
potE |
Serine transporter YbeC, amino acid:H+ symporter family |
Morganella morganii S1 |
2 |
group_1974 |
FBDBKF_14815 |
63910 |
65391 |
-1 |
lysP |
Amino acid permease |
Morganella morganii S1 |
3 |
group_7 |
FBDBKF_16420 |
7837 |
9243 |
1 |
ansP |
L-asparagine transporter or related permease |
Morganella morganii S1 |
4 |
group_7 |
FBDBKF_19025 |
21290 |
22651 |
1 |
proY |
L-asparagine transporter or related permease |
Morganella morganii S1 |
5 |
group_7 |
EHELCC_01050 |
229258 |
230655 |
-1 |
cycA |
D-serine/D-alanine/glycine transporter |
Morganella morganii S2 |
6 |
group_2711 |
EHELCC_04225 |
173000 |
174352 |
1 |
potE |
Serine transporter YbeC, amino acid:H+ symporter family |
Morganella morganii S2 |
7 |
group_7 |
EHELCC_08285 |
124823 |
126229 |
1 |
ansP |
L-asparagine transporter or related permease |
Morganella morganii S2 |
8 |
group_1974 |
EHELCC_15620 |
93986 |
95467 |
-1 |
lysP |
Amino acid permease |
Morganella morganii S2 |
9 |
group_7 |
EHELCC_18770 |
21290 |
22651 |
1 |
proY |
L-asparagine transporter or related permease |
Morganella morganii S2 |
10 |
group_7 |
NLDBIP_02410 |
449481 |
450878 |
1 |
cycA |
D-serine/D-alanine/glycine transporter |
Morganella morganii S4 |
11 |
group_2711 |
NLDBIP_04225 |
172796 |
174148 |
1 |
potE |
Serine transporter YbeC, amino acid:H+ symporter family |
Morganella morganii S4 |
12 |
group_7 |
NLDBIP_08610 |
124823 |
126229 |
1 |
ansP |
L-asparagine transporter or related permease |
Morganella morganii S4 |
13 |
group_1974 |
NLDBIP_16150 |
93986 |
95467 |
-1 |
lysP |
Amino acid permease |
Morganella morganii S4 |
14 |
group_7 |
NLDBIP_18535 |
2862 |
4223 |
-1 |
proY |
L-asparagine transporter or related permease |
Morganella morganii S4 |
15 |
group_7 |
LHKJJB_03925 |
56722 |
58119 |
1 |
cycA |
D-serine/D-alanine/glycine transporter |
Morganella morganii S3 |
16 |
group_7 |
LHKJJB_05655 |
130930 |
132336 |
-1 |
ansP |
L-asparagine transporter or related permease |
Morganella morganii S3 |
17 |
group_2711 |
LHKJJB_10055 |
172910 |
174262 |
1 |
potE |
Serine transporter YbeC, amino acid:H+ symporter family |
Morganella morganii S3 |
18 |
group_1974 |
LHKJJB_15690 |
21219 |
22700 |
1 |
lysP |
Amino acid permease |
Morganella morganii S3 |
19 |
group_7 |
LHKJJB_18640 |
21290 |
22651 |
1 |
proY |
L-asparagine transporter or related permease |
Morganella morganii S3 |
20 |
group_7 |
HKOGLL_03120 |
229463 |
230860 |
-1 |
cycA |
D-serine/D-alanine/glycine transporter |
Morganella morganii S5 |
21 |
group_7 |
HKOGLL_05260 |
109414 |
110820 |
1 |
ansP |
L-asparagine transporter or related permease |
Morganella morganii S5 |
22 |
group_2711 |
HKOGLL_08920 |
16790 |
18142 |
-1 |
potE |
Serine transporter YbeC, amino acid:H+ symporter family |
Morganella morganii S5 |
23 |
group_1974 |
HKOGLL_14810 |
20431 |
21912 |
1 |
lysP |
Amino acid permease |
Morganella morganii S5 |
24 |
group_7 |
HKOGLL_18375 |
21290 |
22651 |
1 |
proY |
L-asparagine transporter or related permease |
Morganella morganii S5 |
25 |
group_2711 |
F4V73_RS00895 |
188858 |
190210 |
-1 |
|
APC family permease |
Morganella psychrotolerans |
26 |
group_7 |
F4V73_RS02940 |
623093 |
624493 |
1 |
|
amino acid permease |
Morganella psychrotolerans |
27 |
group_7 |
F4V73_RS06505 |
1353653 |
1355050 |
1 |
cycA |
D-serine/D-alanine/glycine transporter |
Morganella psychrotolerans |
28 |
group_1974 |
F4V73_RS07615 |
1593371 |
1594870 |
-1 |
|
amino acid permease |
Morganella psychrotolerans |
29 |
group_7 |
F4V73_RS13930 |
421249 |
422685 |
1 |
|
amino acid permease |
Morganella psychrotolerans |
30 |
group_1974 |
PMI_RS04130 |
922643 |
924130 |
1 |
|
amino acid permease |
Proteus mirabilis HI4320 |
31 |
group_1972 |
PMI_RS04140 |
927844 |
929223 |
1 |
|
APC family permease |
Proteus mirabilis HI4320 |
32 |
group_7 |
PMI_RS07785 |
1704951 |
1706333 |
-1 |
|
amino acid permease |
Proteus mirabilis HI4320 |
33 |
group_7 |
PMI_RS07880 |
1723634 |
1725046 |
-1 |
cycA |
D-serine/D-alanine/glycine transporter |
Proteus mirabilis HI4320 |
34 |
group_7 |
PMI_RS11100 |
2443092 |
2444459 |
1 |
|
amino acid permease |
Proteus mirabilis HI4320 |