Orthogroup:group_2009


Homologs in group_2009

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15090 FBDBKF_15090 Morganella morganii S1 lysR LysR family transcriptional regulator
EHELCC_11155 EHELCC_11155 Morganella morganii S2 lysR LysR family transcriptional regulator
NLDBIP_11500 NLDBIP_11500 Morganella morganii S4 lysR LysR family transcriptional regulator
LHKJJB_11360 LHKJJB_11360 Morganella morganii S3 lysR LysR family transcriptional regulator
HKOGLL_09970 HKOGLL_09970 Morganella morganii S5 lysR LysR family transcriptional regulator
F4V73_RS12360 F4V73_RS12360 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS01655 PMI_RS01655 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of group_2009 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2009 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2009

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2009.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 5
2 - 2

Product

# Product Occurence
1 LysR family transcriptional regulator 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 7 LysR substrate binding domain

Annotations of the 153 SwissProt hits

Annotation Number of occurrences
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 2
DNA-binding transcriptional dual regulator OxyR 1
Glycine cleavage system transcriptional activator 3
HTH-type transcriptional activator AaeR 3
HTH-type transcriptional activator AmpR 2
HTH-type transcriptional activator CmpR 3
HTH-type transcriptional activator IlvY 3
HTH-type transcriptional activator NagR 1
HTH-type transcriptional activator NahR 1
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AceR 1
HTH-type transcriptional regulator AdmX 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator BenM 1
HTH-type transcriptional regulator BsdA 1
HTH-type transcriptional regulator BudR 1
HTH-type transcriptional regulator CatM 1
HTH-type transcriptional regulator CatR 1
HTH-type transcriptional regulator CbbR 5
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CitR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CysB 7
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator CzcR 1
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator GalR 1
HTH-type transcriptional regulator GbpR 1
HTH-type transcriptional regulator GltR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator LeuO 1
HTH-type transcriptional regulator MetR 6
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PtxR 1
HTH-type transcriptional regulator SsuR 1
HTH-type transcriptional regulator SyrM 2 1
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TtuA 1
HTH-type transcriptional regulator XapR 1
HTH-type transcriptional regulator YofA 2
HTH-type transcriptional regulator YtlI 1
HTH-type transcriptional regulator cbl 2
Hca operon transcriptional activator HcaR 1
Hydrogen peroxide-inducible genes activator 5
Iron-regulated virulence regulatory protein IrgB 2
Malolactic fermentation system transcriptional activator 1
Mau operon transcriptional activator 1
Nitrogen assimilation regulatory protein nac 2
Octopine catabolism/uptake operon regulatory protein OccR 3
PCP degradation transcriptional activation protein 1
Probable HTH-type transcriptional regulator LeuO 1
Probable HTH-type transcriptional regulator LrhA 2
Probable HTH-type transcriptional regulator LrrA 1
Probable HTH-type transcriptional regulator LtrA 1
Probable RuBisCO transcriptional regulator 15
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 1
Probable nitrogen assimilation transcriptional activator 1
Regulatory protein NocR 2
RuBisCO operon transcriptional regulator 2
SDS degradation transcriptional activation protein 1
Transcriptional activator protein LysR 1
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator HI_0775 1
Uncharacterized HTH-type transcriptional regulator MJ0300 1
Uncharacterized HTH-type transcriptional regulator MT2340 1
Uncharacterized HTH-type transcriptional regulator Mb2303c 1
Uncharacterized HTH-type transcriptional regulator Rv2282c 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YbeF 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcaN 1
Uncharacterized HTH-type transcriptional regulator YcgK 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YeiE 3
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YfiE 1
Uncharacterized HTH-type transcriptional regulator YhjC 1
Uncharacterized HTH-type transcriptional regulator YkuM 1
Uncharacterized HTH-type transcriptional regulator YneJ 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YoaU 1
Uncharacterized HTH-type transcriptional regulator YraN 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) 1
Uncharacterized HTH-type transcriptional regulator y4mQ 1

Protein length

Min length 304
Max length 308
Mean length (sd) 304.6 (1.5)
Median length 304.0

Protein length distribution