Orthogroup:group_2010



Homologs in group_2010

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15095 FBDBKF_15095 Morganella morganii S1 lysA diaminopimelate decarboxylase
EHELCC_11150 EHELCC_11150 Morganella morganii S2 lysA diaminopimelate decarboxylase
NLDBIP_11495 NLDBIP_11495 Morganella morganii S4 lysA diaminopimelate decarboxylase
LHKJJB_11355 LHKJJB_11355 Morganella morganii S3 lysA diaminopimelate decarboxylase
HKOGLL_09965 HKOGLL_09965 Morganella morganii S5 lysA diaminopimelate decarboxylase
F4V73_RS12355 F4V73_RS12355 Morganella psychrotolerans lysA diaminopimelate decarboxylase
PMI_RS01660 PMI_RS01660 Proteus mirabilis HI4320 lysA diaminopimelate decarboxylase

Distribution of group_2010 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2010 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2010

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2010.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysA 7

Product

# Product Occurence
1 diaminopimelate decarboxylase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0019 7 E Amino acid transport and metabolism (E) Diaminopimelate decarboxylase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00278 7 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
PF02784 7 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

Annotations of the 80 SwissProt hits

Annotation Number of occurrences
2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase 1
Amino acid decarboxylase lolD1 1
Antizyme inhibitor 1 4
Antizyme inhibitor 2 2
D-ornithine/D-lysine decarboxylase 1
Decarboxylase flvG 1
Diaminopimelate decarboxylase 39
Diaminopimelate decarboxylase 1, chloroplastic 1
Diaminopimelate decarboxylase 2, chloroplastic 1
L-glutamyl-[BtrI acyl-carrier protein] decarboxylase 1
Lysine/ornithine decarboxylase 1
Ornithine decarboxylase 16
Ornithine decarboxylase (Fragment) 1
Ornithine decarboxylase 1 2
Ornithine decarboxylase 1A, chloroplastic 1
Ornithine decarboxylase 1B, chloroplastic 1
Ornithine decarboxylase 2 1
Ornithine decarboxylase, chloroplastic 2
Probable diaminopimelate decarboxylase, chloroplastic 1
Probable ornithine decarboxylase 1
Protein TabA 1

Protein length

Min length 414
Max length 416
Mean length (sd) 415.7 (0.8)
Median length 416.0

Protein length distribution