PF00037
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00037, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 20 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00037 |
Description |
4Fe-4S binding domain |
Occurence in the database
PF00037 is associated with 20 different proteins (see tab "Protein list" and "Profile") |
The 20 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_555 |
FBDBKF_01390 |
272972 |
273232 |
1 |
yfhL |
YfhL family 4Fe-4S dicluster ferredoxin |
Morganella morganii S1 |
1 |
group_798 |
FBDBKF_03745 |
152857 |
153477 |
-1 |
hycB |
Fe-S-cluster-containing hydrogenase component 2 |
Morganella morganii S1 |
2 |
group_1601 |
FBDBKF_10445 |
44677 |
45522 |
-1 |
iorA |
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit |
Morganella morganii S1 |
3 |
group_555 |
EHELCC_00155 |
35636 |
35896 |
-1 |
yfhL |
YfhL family 4Fe-4S dicluster ferredoxin |
Morganella morganii S2 |
4 |
group_798 |
EHELCC_06790 |
93626 |
94246 |
1 |
hycB |
Fe-S-cluster-containing hydrogenase component 2 |
Morganella morganii S2 |
5 |
group_1601 |
EHELCC_14780 |
44667 |
45512 |
-1 |
iorA |
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit |
Morganella morganii S2 |
6 |
group_555 |
NLDBIP_03305 |
644240 |
644500 |
1 |
yfhL |
YfhL family 4Fe-4S dicluster ferredoxin |
Morganella morganii S4 |
7 |
group_798 |
NLDBIP_07115 |
93499 |
94119 |
1 |
hycB |
Fe-S-cluster-containing hydrogenase component 2 |
Morganella morganii S4 |
8 |
group_1601 |
NLDBIP_14610 |
44667 |
45512 |
-1 |
iorA |
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit |
Morganella morganii S4 |
9 |
group_555 |
LHKJJB_04820 |
251481 |
251741 |
1 |
yfhL |
YfhL family 4Fe-4S dicluster ferredoxin |
Morganella morganii S3 |
10 |
group_798 |
LHKJJB_06650 |
57245 |
57865 |
1 |
hycB |
Fe-S-cluster-containing hydrogenase component 2 |
Morganella morganii S3 |
11 |
group_1601 |
LHKJJB_14735 |
96214 |
97059 |
1 |
iorA |
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit |
Morganella morganii S3 |
12 |
group_555 |
HKOGLL_02225 |
35841 |
36101 |
-1 |
yfhL |
YfhL family 4Fe-4S dicluster ferredoxin |
Morganella morganii S5 |
13 |
group_798 |
HKOGLL_04280 |
175522 |
176142 |
-1 |
hycB |
Fe-S-cluster-containing hydrogenase component 2 |
Morganella morganii S5 |
14 |
group_1601 |
HKOGLL_13355 |
96214 |
97059 |
1 |
iorA |
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit |
Morganella morganii S5 |
15 |
group_555 |
F4V73_RS02005 |
435329 |
435589 |
-1 |
|
YfhL family 4Fe-4S dicluster ferredoxin |
Morganella psychrotolerans |
16 |
group_798 |
F4V73_RS11125 |
363961 |
364578 |
1 |
|
4Fe-4S dicluster domain-containing protein |
Morganella psychrotolerans |
17 |
group_1601 |
F4V73_RS14145 |
42981 |
43856 |
-1 |
|
4Fe-4S binding protein |
Morganella psychrotolerans |
18 |
group_798 |
PMI_RS12500 |
2772202 |
2772822 |
-1 |
|
4Fe-4S dicluster domain-containing protein |
Proteus mirabilis HI4320 |
19 |
group_785 |
PMI_RS17815 |
3915209 |
3915766 |
1 |
hydN |
electron transport protein HydN |
Proteus mirabilis HI4320 |