Homologs in group_798

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03745 FBDBKF_03745 73.2 Morganella morganii S1 hycB Fe-S-cluster-containing hydrogenase component 2
EHELCC_06790 EHELCC_06790 73.2 Morganella morganii S2 hycB Fe-S-cluster-containing hydrogenase component 2
NLDBIP_07115 NLDBIP_07115 73.2 Morganella morganii S4 hycB Fe-S-cluster-containing hydrogenase component 2
LHKJJB_06650 LHKJJB_06650 73.2 Morganella morganii S3 hycB Fe-S-cluster-containing hydrogenase component 2
HKOGLL_04280 HKOGLL_04280 73.2 Morganella morganii S5 hycB Fe-S-cluster-containing hydrogenase component 2
F4V73_RS11125 F4V73_RS11125 72.7 Morganella psychrotolerans - 4Fe-4S dicluster domain-containing protein

Distribution of the homologs in the orthogroup group_798

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_798

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23481 2.42e-75 228 54 1 206 2 hyfA Hydrogenase-4 component A Escherichia coli (strain K12)
P0AAK3 2.09e-65 203 52 2 203 3 hycB Formate hydrogenlyase subunit 2 Shigella flexneri
P0AAK1 2.09e-65 203 52 2 203 1 hycB Formate hydrogenlyase subunit 2 Escherichia coli (strain K12)
P0AAK2 2.09e-65 203 52 2 203 3 hycB Formate hydrogenlyase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P37127 4.48e-35 133 38 3 195 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
P0AAK4 5.21e-31 114 36 4 197 3 hydN Electron transport protein HydN Escherichia coli (strain K12)
P0AAK5 5.21e-31 114 36 4 197 3 hydN Electron transport protein HydN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK6 5.21e-31 114 36 4 197 3 hydN Electron transport protein HydN Escherichia coli O157:H7
P56256 1.5e-30 112 36 2 186 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
Q46819 2.23e-28 107 35 4 196 4 ygfS Putative electron transport protein YgfS Escherichia coli (strain K12)
P20925 7.97e-28 105 36 2 164 4 None Frd operon probable iron-sulfur subunit A (Fragment) Proteus vulgaris
P31894 1.17e-26 103 32 3 203 1 cooF Iron-sulfur protein Rhodospirillum rubrum
Q46820 2.01e-25 106 32 4 200 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
Q57713 7.93e-21 88 31 5 203 3 MJ0265 Uncharacterized ferredoxin MJ0265 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P0A1I1 3.76e-15 73 28 7 224 1 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I2 3.76e-15 73 28 7 224 3 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhi
Q57619 3.78e-15 72 27 5 183 3 MJ0155 Uncharacterized ferredoxin MJ0155 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q7WTT9 5.59e-15 73 30 10 213 1 arrB Arsenate respiratory reductase iron-sulfur subunit ArrB Shewanella sp. (strain ANA-3)
Q9HR73 1.38e-13 70 28 6 189 2 dmsB Putative dimethyl sulfoxide reductase iron-sulfur subunit B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P27273 2.91e-12 66 28 5 185 1 fdhB1 Formate dehydrogenase iron-sulfur subunit Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q8X616 8.95e-12 65 28 5 187 3 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli O157:H7
P77375 4.31e-11 63 28 5 187 2 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli (strain K12)
P45015 1.43e-10 62 27 4 177 3 nrfC Protein NrfC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q57712 1.9e-10 60 25 3 171 3 MJ0264 Uncharacterized protein MJ0264 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P0AAK9 1.93e-10 61 29 7 178 3 nrfC Protein NrfC Shigella flexneri
P0AAK7 1.93e-10 61 29 7 178 3 nrfC Protein NrfC Escherichia coli (strain K12)
P0AAK8 1.93e-10 61 29 7 178 3 nrfC Protein NrfC Escherichia coli O157:H7
Q7CQM9 4.92e-10 60 34 3 98 1 ttrB Tetrathionate reductase subunit B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P18776 5.01e-10 60 31 3 104 1 dmsB Anaerobic dimethyl sulfoxide reductase chain B Escherichia coli (strain K12)
O30080 5.41e-10 60 25 8 200 3 ttrB Tetrathionate reductase subunit B Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q83RZ7 6.25e-10 59 31 3 104 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Shigella flexneri
P0AAJ1 2.32e-09 58 30 3 104 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli (strain K12)
P0AAJ2 2.32e-09 58 30 3 104 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P45003 2.67e-09 58 29 3 105 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAJ7 3.86e-09 58 26 8 217 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Shigella flexneri
P0AAJ5 3.86e-09 58 26 8 217 1 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli (strain K12)
P0AAJ6 3.86e-09 58 26 8 217 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31076 1.87e-08 55 27 5 179 4 psrB Polysulfide reductase chain B Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q8L3A9 5.55e-08 55 26 7 178 1 padI NADH-dependent phenylglyoxylate dehydrogenase subunit beta Aromatoleum evansii
P33389 1.43e-07 54 27 7 197 4 DVU_0535 Protein DVU_0535 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
D3RNN7 1.91e-07 53 27 2 108 1 soeB Sulfite dehydrogenase subunit B Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
O29751 1.19e-06 51 30 7 136 1 hmeA Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P0AAK0 3.07e-06 50 28 7 142 3 hybA Hydrogenase-2 operon protein HybA Shigella flexneri
P0AAJ8 3.07e-06 50 28 7 142 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli (strain K12)
P0AAJ9 3.07e-06 50 28 7 142 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli O157:H7
P0AAJ4 1.06e-05 48 25 8 199 3 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Shigella flexneri
P0AAJ3 1.06e-05 48 25 8 199 1 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Escherichia coli (strain K12)
P44450 1.81e-05 47 23 7 203 3 fdxH Formate dehydrogenase iron-sulfur subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P60232 3.36e-05 47 27 9 186 1 mvhB Polyferredoxin protein MvhB Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
Q00388 6.65e-05 46 24 11 258 4 vhuB Polyferredoxin protein VhuB Methanococcus voltae
Q9S1G9 0.000127 45 34 1 52 1 serB Selenate reductase subunit beta Thauera selenatis
G0SEV9 0.000131 45 36 4 87 3 RLI1 Translation initiation factor RLI1 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
P82853 0.000212 41 38 1 59 3 Ta0517 Probable ferredoxin TA0517 Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
H6LC27 0.00024 44 32 5 109 1 rnfB Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit B Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1)
Q1RH11 0.000264 42 27 1 86 3 fdxA Ferredoxin Rickettsia bellii (strain RML369-C)
Q58593 0.000274 44 45 0 46 4 vhuB Polyferredoxin protein VhuB Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P00195 0.00028 40 50 0 38 1 None Ferredoxin Clostridium pasteurianum
P60069 0.000496 43 32 1 52 1 clrB Chlorate reductase subunit beta Ideonella dechloratans
P0AAL8 0.000657 42 23 2 108 4 ydhY Uncharacterized ferredoxin-like protein YdhY Shigella flexneri
P0AAL6 0.000657 42 23 2 108 2 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli (strain K12)
P0AAL7 0.000657 42 23 2 108 4 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli O157:H7
P00194 0.000779 39 50 0 38 1 None Ferredoxin-1 Rhodospirillum rubrum
Q45560 0.000786 40 33 1 65 1 fdxA Ferredoxin 7Fe Hydrogenibacillus schlegelii
O60102 0.000836 43 33 5 106 3 rli1 Translation initiation factor rli1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P19318 0.001 43 36 1 52 1 narY Respiratory nitrate reductase 2 beta chain Escherichia coli (strain K12)
Q50784 0.001 42 27 9 186 4 mvhB Polyferredoxin protein MvhB Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12500
Feature type CDS
Gene -
Product 4Fe-4S dicluster domain-containing protein
Location 2772202 - 2772822 (strand: -1)
Length 621 (nucleotides) / 206 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_798
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00037 4Fe-4S binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1142 Energy production and conversion (C) C Fe-S-cluster-containing hydrogenase component 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12136 hydrogenase-4 component A [EC:1.-.-.-] - -

Protein Sequence

MNRFVIAEPQRCIGCNTCMAACSEVHQAVGLQAHPRLTVVKVEDQTAPMLCRHCEDAPCASVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAITPSGSKPVNLPAVFDHFVPEEMLADVPASLPTTNPFLAWNAGIRAIAVKCDLCAFSDEGPACVKVCPTDALHLVEEDSLEEQMKARRLDSVMEPMTSLDDLSTLTQERK

Flanking regions ( +/- flanking 50bp)

ATTAACGACAGCCGTGAGCTGTTAAACGTTTTTCTCGGAGGATGTGGCGAATGAATCGCTTTGTTATTGCAGAGCCACAACGATGCATAGGGTGTAATACCTGTATGGCAGCTTGTTCGGAAGTACACCAAGCTGTGGGATTACAGGCGCATCCGCGTCTTACAGTGGTAAAAGTGGAGGATCAGACCGCCCCGATGCTTTGTCGGCATTGTGAGGATGCTCCTTGTGCTAGTGTGTGCCCAGTCAATGCCATTACTCATGAAGATAATATGATCTTTCTTAATGAGAGCTTGTGTATTGGCTGTAAGTTATGCGGTTTGGTATGTCCTTTTGGTGCGATTACACCATCAGGCAGTAAACCCGTTAACTTACCGGCTGTGTTTGACCATTTTGTGCCTGAAGAGATGCTGGCAGATGTGCCCGCAAGTCTTCCTACTACCAATCCATTCCTTGCATGGAATGCGGGTATTCGCGCAATAGCAGTGAAATGTGACTTGTGTGCTTTCTCAGATGAGGGGCCTGCTTGCGTAAAAGTCTGTCCGACAGATGCCTTACATCTAGTTGAAGAAGATAGCCTTGAAGAGCAGATGAAAGCGCGTCGTTTAGACTCTGTGATGGAACCTATGACAAGTCTTGATGATCTATCTACGTTGACACAGGAGCGCAAGTAATATGGAACCTCTTCAGTTACTGATGTGGTCAATCATCCTGTATGTTGTTG