Homologs in group_798

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03745 FBDBKF_03745 100.0 Morganella morganii S1 hycB Fe-S-cluster-containing hydrogenase component 2
EHELCC_06790 EHELCC_06790 100.0 Morganella morganii S2 hycB Fe-S-cluster-containing hydrogenase component 2
LHKJJB_06650 LHKJJB_06650 100.0 Morganella morganii S3 hycB Fe-S-cluster-containing hydrogenase component 2
HKOGLL_04280 HKOGLL_04280 100.0 Morganella morganii S5 hycB Fe-S-cluster-containing hydrogenase component 2
F4V73_RS11125 F4V73_RS11125 95.1 Morganella psychrotolerans - 4Fe-4S dicluster domain-containing protein
PMI_RS12500 PMI_RS12500 73.2 Proteus mirabilis HI4320 - 4Fe-4S dicluster domain-containing protein

Distribution of the homologs in the orthogroup group_798

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_798

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23481 3.6e-69 213 54 3 190 2 hyfA Hydrogenase-4 component A Escherichia coli (strain K12)
P0AAK3 4.58e-66 204 50 1 204 3 hycB Formate hydrogenlyase subunit 2 Shigella flexneri
P0AAK1 4.58e-66 204 50 1 204 1 hycB Formate hydrogenlyase subunit 2 Escherichia coli (strain K12)
P0AAK2 4.58e-66 204 50 1 204 3 hycB Formate hydrogenlyase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK4 8.59e-33 119 36 4 195 3 hydN Electron transport protein HydN Escherichia coli (strain K12)
P0AAK5 8.59e-33 119 36 4 195 3 hydN Electron transport protein HydN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK6 8.59e-33 119 36 4 195 3 hydN Electron transport protein HydN Escherichia coli O157:H7
Q46819 3.64e-31 114 37 4 191 4 ygfS Putative electron transport protein YgfS Escherichia coli (strain K12)
P56256 2.05e-30 112 35 3 191 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
P37127 9.22e-30 118 34 4 208 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
Q46820 1.09e-27 112 34 5 204 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
P20925 1.6e-26 102 38 4 157 4 None Frd operon probable iron-sulfur subunit A (Fragment) Proteus vulgaris
P31894 8.05e-23 94 32 3 185 1 cooF Iron-sulfur protein Rhodospirillum rubrum
Q57713 1.23e-17 79 31 4 176 3 MJ0265 Uncharacterized ferredoxin MJ0265 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q57619 4.96e-14 69 25 4 193 3 MJ0155 Uncharacterized ferredoxin MJ0155 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q7WTT9 2.11e-13 69 29 7 187 1 arrB Arsenate respiratory reductase iron-sulfur subunit ArrB Shewanella sp. (strain ANA-3)
Q57712 8.27e-12 63 27 5 183 3 MJ0264 Uncharacterized protein MJ0264 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9HR73 1.67e-10 62 27 8 189 2 dmsB Putative dimethyl sulfoxide reductase iron-sulfur subunit B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P27273 3.26e-10 60 39 2 94 1 fdhB1 Formate dehydrogenase iron-sulfur subunit Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P31076 4.29e-10 60 29 6 179 4 psrB Polysulfide reductase chain B Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
O30080 1.39e-09 58 28 7 172 3 ttrB Tetrathionate reductase subunit B Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P0A1I1 3.95e-09 57 26 8 193 1 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I2 3.95e-09 57 26 8 193 3 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhi
P45003 5.43e-09 57 24 8 210 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAK9 9.2e-09 56 26 6 177 3 nrfC Protein NrfC Shigella flexneri
P0AAK7 9.2e-09 56 26 6 177 3 nrfC Protein NrfC Escherichia coli (strain K12)
P0AAK8 9.2e-09 56 26 6 177 3 nrfC Protein NrfC Escherichia coli O157:H7
P45015 1.08e-08 56 26 6 183 3 nrfC Protein NrfC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAJ1 1.65e-08 55 31 4 109 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli (strain K12)
P0AAJ2 1.65e-08 55 31 4 109 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
D3RNN7 2.16e-08 55 27 3 115 1 soeB Sulfite dehydrogenase subunit B Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
Q7CQM9 2.62e-08 55 33 4 101 1 ttrB Tetrathionate reductase subunit B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P18776 3.91e-08 54 28 2 104 1 dmsB Anaerobic dimethyl sulfoxide reductase chain B Escherichia coli (strain K12)
Q83RZ7 4.72e-08 54 28 2 104 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Shigella flexneri
Q8X616 1.34e-07 53 28 8 189 3 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli O157:H7
P77375 1.51e-07 53 28 8 189 2 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli (strain K12)
Q8L3A9 1.8e-07 53 26 6 181 1 padI NADH-dependent phenylglyoxylate dehydrogenase subunit beta Aromatoleum evansii
P33389 2.25e-05 47 25 9 198 4 DVU_0535 Protein DVU_0535 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q00388 2.7e-05 47 26 8 189 4 vhuB Polyferredoxin protein VhuB Methanococcus voltae
O29751 3.38e-05 47 40 1 54 1 hmeA Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P44450 3.97e-05 47 24 8 206 3 fdxH Formate dehydrogenase iron-sulfur subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q58593 0.000162 45 47 0 46 4 vhuB Polyferredoxin protein VhuB Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P03941 0.000207 42 34 1 69 1 None Ferredoxin Alicyclobacillus acidocaldarius subsp. acidocaldarius
P81292 0.000279 43 26 5 156 4 MJ0514.1 Uncharacterized polyferredoxin-like protein MJ0514.1 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P60232 0.000282 44 26 9 186 1 mvhB Polyferredoxin protein MvhB Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
O52682 0.000416 44 43 2 51 1 hydB Bifurcating [FeFe] hydrogenase beta subunit Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
A1SE35 0.000529 42 28 2 99 3 nuoI NADH-quinone oxidoreductase subunit I Nocardioides sp. (strain ATCC BAA-499 / JS614)
Q45560 0.00074 40 32 0 58 1 fdxA Ferredoxin 7Fe Hydrogenibacillus schlegelii

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_07115
Feature type CDS
Gene hycB
Product Fe-S-cluster-containing hydrogenase component 2
Location 93499 - 94119 (strand: 1)
Length 621 (nucleotides) / 206 (amino acids)

Contig

Accession ZDB_522
Length 269640 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_798
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00037 4Fe-4S binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1142 Energy production and conversion (C) C Fe-S-cluster-containing hydrogenase component 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12136 hydrogenase-4 component A [EC:1.-.-.-] - -

Protein Sequence

MNRFVIADPHLCIGCNTCMAACSETHKQQGLQTHPRLNVVKIGELTAPMLCRQCDDAPCARVCPVNAITHENDMIVLNESLCIGCKLCGLVCPFGAITPSGSKPVDMPDFFEQYVPKEMLLDVPDSLPTMNPFLAWNAGIRNIAVKCDLCDFSEEGPACVKVCPTDALHLVEENQLENESAKRRTASVDAMPPEFDIFVSGQESRK

Flanking regions ( +/- flanking 50bp)

AAGGGTATCAAACTATATGACTCGTCTGATTTTTCTGGAGGGTGGGGCGAATGAATCGCTTTGTTATTGCCGACCCGCATCTTTGTATCGGATGTAATACCTGTATGGCGGCCTGTTCTGAGACGCATAAACAGCAGGGATTACAAACACATCCGAGATTGAATGTGGTGAAAATCGGGGAACTGACCGCGCCGATGCTTTGTCGTCAGTGTGATGATGCTCCGTGTGCCCGTGTGTGTCCGGTGAATGCCATTACACACGAAAATGACATGATCGTGCTGAATGAAAGCCTGTGTATCGGCTGTAAACTGTGCGGTCTGGTCTGTCCGTTCGGGGCTATCACCCCGTCAGGCAGTAAACCTGTCGATATGCCGGATTTCTTTGAGCAGTATGTGCCGAAAGAGATGCTGCTGGATGTGCCGGACAGTCTGCCGACCATGAACCCGTTCCTGGCATGGAATGCCGGTATCCGTAATATCGCGGTGAAATGCGATTTGTGTGATTTCAGTGAAGAAGGACCGGCGTGTGTGAAAGTGTGCCCGACCGATGCCCTCCATCTCGTTGAAGAGAATCAGCTGGAAAACGAAAGTGCGAAACGTCGTACCGCGTCTGTCGATGCGATGCCGCCGGAGTTCGACATTTTCGTCTCAGGACAGGAGAGCAGAAAATGACATCTCTTGAATTACTCTTATGGTCTGTTGCCCTGTATACCGCCGGCGGT