PF00004

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00004
Protein list: lists the 52 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00004
Description ATPase family associated with various cellular activities (AAA)

Occurence in the database

PF00004 is associated with 52 different proteins
The 52 proteins are classified into 8 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_428 FBDBKF_01335 258317 261037 1 tssH type VI secretion system ATPase TssH Morganella morganii S1
1 group_1273 FBDBKF_07065 76459 78744 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S1
2 group_1281 FBDBKF_07110 89861 91204 1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S1
3 group_1454 FBDBKF_08630 107068 109017 1 ftsH ATP-dependent zinc metalloprotease FtsH Morganella morganii S1
4 group_1798 FBDBKF_12250 110300 111634 1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S1
5 group_131 FBDBKF_15370 81826 84399 1 clpB ATP-dependent chaperone ClpB Morganella morganii S1
6 group_2151 FBDBKF_15885 26863 29220 1 lon endopeptidase La Morganella morganii S1
7 group_428 EHELCC_00210 47831 50551 -1 tssH type VI secretion system ATPase TssH Morganella morganii S2
8 group_1281 EHELCC_03860 94982 96325 -1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S2
9 group_1273 EHELCC_03905 107442 109727 -1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S2
10 group_131 EHELCC_10875 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S2
11 group_1454 EHELCC_12895 54708 56657 -1 ftsH ATP-dependent zinc metalloprotease FtsH Morganella morganii S2
12 group_1798 EHELCC_14055 23071 24405 -1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S2
13 group_2151 EHELCC_18485 14302 16659 1 lon endopeptidase La Morganella morganii S2
14 group_428 NLDBIP_03250 629585 632305 1 tssH type VI secretion system ATPase TssH Morganella morganii S4
15 group_1281 NLDBIP_03860 94778 96121 -1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S4
16 group_1273 NLDBIP_03905 107238 109523 -1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S4
17 group_131 NLDBIP_11220 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S4
18 group_1454 NLDBIP_13235 54708 56657 -1 ftsH ATP-dependent zinc metalloprotease FtsH Morganella morganii S4
19 group_1798 NLDBIP_15150 27008 28342 -1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S4
20 group_2151 NLDBIP_17320 14302 16659 1 lon endopeptidase La Morganella morganii S4
21 group_428 LHKJJB_04765 236826 239546 1 tssH type VI secretion system ATPase TssH Morganella morganii S3
22 group_1281 LHKJJB_09690 94892 96235 -1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S3
23 group_1273 LHKJJB_09735 107352 109637 -1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S3
24 group_131 LHKJJB_11080 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S3
25 group_1454 LHKJJB_13320 105786 107735 1 ftsH ATP-dependent zinc metalloprotease FtsH Morganella morganii S3
26 group_1798 LHKJJB_15460 110300 111634 1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S3
27 group_2151 LHKJJB_17340 39529 41886 -1 lon endopeptidase La Morganella morganii S3
28 group_428 HKOGLL_02280 48036 50756 -1 tssH type VI secretion system ATPase TssH Morganella morganii S5
29 group_1273 HKOGLL_09240 81415 83700 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S5
30 group_1281 HKOGLL_09285 94817 96160 1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase) Morganella morganii S5
31 group_131 HKOGLL_09690 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S5
32 group_1454 HKOGLL_11710 54708 56657 -1 ftsH ATP-dependent zinc metalloprotease FtsH Morganella morganii S5
33 group_1798 HKOGLL_14580 96963 98297 1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S5
34 group_2151 HKOGLL_17055 14302 16659 1 lon endopeptidase La Morganella morganii S5
35 group_1273 F4V73_RS01250 264241 266526 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella psychrotolerans
36 group_1281 F4V73_RS01295 277729 279072 1 replication-associated recombination protein A Morganella psychrotolerans
37 group_428 F4V73_RS02335 495047 497734 -1 tssH type VI secretion system ATPase TssH Morganella psychrotolerans
38 group_131 F4V73_RS06995 1451477 1453738 -1 AAA family ATPase Morganella psychrotolerans
39 group_131 F4V73_RS09390 1976445 1979222 -1 tssH type VI secretion system ATPase TssH Morganella psychrotolerans
40 group_1454 F4V73_RS09855 74175 76118 1 ftsH ATP-dependent zinc metalloprotease FtsH Morganella psychrotolerans
41 group_131 F4V73_RS12085 553 3126 -1 clpB ATP-dependent chaperone ClpB Morganella psychrotolerans
42 group_2151 F4V73_RS16430 102410 104767 -1 lon endopeptidase La Morganella psychrotolerans
43 group_131 F4V73_RS16840 194692 197388 -1 tssH type VI secretion system ATPase TssH Morganella psychrotolerans
44 group_1798 F4V73_RS17080 44006 45340 1 hslU HslU--HslV peptidase ATPase subunit Morganella psychrotolerans
45 group_2151 PMI_RS00565 145300 147654 1 lon endopeptidase La Proteus mirabilis HI4320
46 group_131 PMI_RS01920 449810 452386 1 clpB ATP-dependent chaperone ClpB Proteus mirabilis HI4320
47 group_1273 PMI_RS03395 749183 751477 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Proteus mirabilis HI4320
48 group_428 PMI_RS03640 817939 820650 -1 tssH type VI secretion system ATPase TssH Proteus mirabilis HI4320
49 group_4244 PMI_RS13045 2891965 2896899 1 DNA repair ATPase Proteus mirabilis HI4320
50 group_1798 PMI_RS15900 3529049 3530389 -1 hslU HslU--HslV peptidase ATPase subunit Proteus mirabilis HI4320
51 group_1454 PMI_RS16985 3737506 3739446 1 ftsH ATP-dependent zinc metalloprotease FtsH Proteus mirabilis HI4320