Orthogroup:group_1273


Homologs in group_1273

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07065 FBDBKF_07065 Morganella morganii S1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA
EHELCC_03905 EHELCC_03905 Morganella morganii S2 clpA ATP-dependent Clp protease ATP-binding subunit ClpA
NLDBIP_03905 NLDBIP_03905 Morganella morganii S4 clpA ATP-dependent Clp protease ATP-binding subunit ClpA
LHKJJB_09735 LHKJJB_09735 Morganella morganii S3 clpA ATP-dependent Clp protease ATP-binding subunit ClpA
HKOGLL_09240 HKOGLL_09240 Morganella morganii S5 clpA ATP-dependent Clp protease ATP-binding subunit ClpA
F4V73_RS01250 F4V73_RS01250 Morganella psychrotolerans clpA ATP-dependent Clp protease ATP-binding subunit ClpA
PMI_RS03395 PMI_RS03395 Proteus mirabilis HI4320 clpA ATP-dependent Clp protease ATP-binding subunit ClpA

Distribution of group_1273 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1273 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1273

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1273.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 clpA 7

Product

# Product Occurence
1 ATP-dependent Clp protease ATP-binding subunit ClpA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0542 7 O Posttranslational modification, protein turnover, chaperones (O) ATP-dependent Clp protease, ATP-binding subunit ClpA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03694 7 ATP-dependent Clp protease ATP-binding subunit ClpA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00004 7 ATPase family associated with various cellular activities (AAA)
PF02861 7 Clp amino terminal domain, pathogenicity island component
PF07724 7 AAA domain (Cdc48 subfamily)
PF10431 7 C-terminal, D2-small domain, of ClpB protein
PF17871 7 AAA lid domain

Annotations of the 478 SwissProt hits

Annotation Number of occurrences
AAA+ ATPase ClpV1 1
ATP-dependent Clp protease ATP-binding subunit ClpA 3
ATP-dependent Clp protease ATP-binding subunit ClpA homolog 5
ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic 1
ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic 1
ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) 1
ATP-dependent Clp protease ATP-binding subunit ClpC 13
ATP-dependent Clp protease ATP-binding subunit ClpC1 3
ATP-dependent Clp protease ATP-binding subunit ClpE 4
ATP-dependent Clp protease ATP-binding subunit ClpL 10
ATP-dependent Clp protease ATP-binding subunit ClpX 193
ATP-dependent Clp protease ATP-binding subunit ClpX 1 1
ATP-dependent protease ATP-binding subunit-like protein 1
ATP-dependent protease ATP-binding subunit-like protein AmiB 1
ATP-dependent protease ATPase subunit HslU 8
ATPase histone chaperone abo1 1
ATPase-like fidgetin 1
Cell division cycle protein 48 homolog AF_1297 1
Cell division cycle protein 48 homolog MJ1156 1
Chaperone protein ClpB 123
Chaperone protein ClpB 1 6
Chaperone protein ClpB 2 6
Chaperone protein ClpB1 2
Chaperone protein ClpB2, chloroplastic 1
Chaperone protein ClpB3, chloroplastic 1
Chaperone protein ClpB3, mitochondrial 1
Chaperone protein ClpB4, mitochondrial 1
Chaperone protein ClpC, chloroplastic 1
Chaperone protein ClpC1, chloroplastic 2
Chaperone protein ClpC2, chloroplastic 2
Chaperone protein ClpC3, chloroplastic 1
Chaperone protein ClpC4, chloroplastic 1
Chaperone protein ClpD, chloroplastic 1
Chaperone protein ClpD1, chloroplastic 1
Chaperone protein ClpD2, chloroplastic 1
ClpA homolog protein 1
Fidgetin-like protein 1 1
Heat shock protein 100 1
Heat shock protein 100 (Fragment) 1
Heat shock protein 104 2
Heat shock protein 78, mitochondrial 3
Heat shock protein hsp98 1
Hemolysin B 1
Katanin p60 ATPase-containing subunit A-like 1 1
Katanin p60 ATPase-containing subunit A1 1
Lon protease 14
Lon protease 1 2
Lon protease 2 1
Lon protease homolog 2, peroxisomal 5
Lon protease homolog 4, chloroplastic/mitochondrial 1
Lon protease homolog, mitochondrial 9
Lon protease homolog, mitochondrial 1 1
Mitochondrial disaggregase 4
Negative regulator of genetic competence ClpC/MecB 1
Outer mitochondrial transmembrane helix translocase 1
Probable 26S proteasome subunit YTA6 1
Probable ATP-dependent Clp protease ATP-binding subunit 6
Probable chaperone protein ClpB 1 1
Probable chaperone protein ClpB 2 1
Probable spastin homolog Bm1_53365 1
Probable spastin homolog spas-1 1
Protein SAP1 1
Protein SAV 1
Protein SMAX1-LIKE 2 1
Protein SMAX1-LIKE 6 1
Protein SMAX1-like 1
Protein SUPPRESSOR OF MAX2 1 1
Putative chaperone protein ClpB2, chloroplastic 1
Spastin 2
Uncharacterized AAA domain-containing protein C328.04 1
Vacuolar protein sorting-associated protein 4B 4

Protein length

Min length 761
Max length 764
Mean length (sd) 761.4 (1.1)
Median length 761.0

Protein length distribution