Orthogroup:group_428


Homologs in group_428

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01335 FBDBKF_01335 Morganella morganii S1 tssH type VI secretion system ATPase TssH
EHELCC_00210 EHELCC_00210 Morganella morganii S2 tssH type VI secretion system ATPase TssH
NLDBIP_03250 NLDBIP_03250 Morganella morganii S4 tssH type VI secretion system ATPase TssH
LHKJJB_04765 LHKJJB_04765 Morganella morganii S3 tssH type VI secretion system ATPase TssH
HKOGLL_02280 HKOGLL_02280 Morganella morganii S5 tssH type VI secretion system ATPase TssH
F4V73_RS02335 F4V73_RS02335 Morganella psychrotolerans tssH type VI secretion system ATPase TssH
PMI_RS03640 PMI_RS03640 Proteus mirabilis HI4320 tssH type VI secretion system ATPase TssH

Distribution of group_428 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_428 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_428

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_428.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssH 7

Product

# Product Occurence
1 type VI secretion system ATPase TssH 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0542 7 O Posttranslational modification, protein turnover, chaperones (O) ATP-dependent Clp protease, ATP-binding subunit ClpA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11907 7 type VI secretion system protein VasG Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00004 7 ATPase family associated with various cellular activities (AAA)
PF07724 7 AAA domain (Cdc48 subfamily)
PF10431 7 C-terminal, D2-small domain, of ClpB protein
PF17871 7 AAA lid domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG035575 6 type VI secretion system ATPase TssH VF1122 Effector delivery system
VFG038395 1 type VI secretion system ATPase ClpV1 VF0480 Effector delivery system

Annotations of the 223 SwissProt hits

Annotation Number of occurrences
AAA+ ATPase ClpV1 1
ATP-dependent Clp protease ATP-binding subunit ClpA 3
ATP-dependent Clp protease ATP-binding subunit ClpA homolog 5
ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic 1
ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic 1
ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) 1
ATP-dependent Clp protease ATP-binding subunit ClpC 13
ATP-dependent Clp protease ATP-binding subunit ClpC1 3
ATP-dependent Clp protease ATP-binding subunit ClpE 4
ATP-dependent Clp protease ATP-binding subunit ClpL 10
ATP-dependent protease ATP-binding subunit-like protein 1
ATP-dependent protease ATP-binding subunit-like protein AmiB 1
Chaperone protein ClpB 123
Chaperone protein ClpB 1 6
Chaperone protein ClpB 2 6
Chaperone protein ClpB1 2
Chaperone protein ClpB2, chloroplastic 1
Chaperone protein ClpB3, chloroplastic 1
Chaperone protein ClpB3, mitochondrial 1
Chaperone protein ClpB4, mitochondrial 1
Chaperone protein ClpC, chloroplastic 1
Chaperone protein ClpC1, chloroplastic 2
Chaperone protein ClpC2, chloroplastic 2
Chaperone protein ClpC3, chloroplastic 1
Chaperone protein ClpC4, chloroplastic 1
Chaperone protein ClpD, chloroplastic 1
Chaperone protein ClpD1, chloroplastic 1
Chaperone protein ClpD2, chloroplastic 1
ClpA homolog protein 1
Heat shock protein 100 1
Heat shock protein 104 2
Heat shock protein 78, mitochondrial 3
Heat shock protein hsp98 1
Hemolysin B 1
Lon protease 2
Mitochondrial disaggregase 4
Negative regulator of genetic competence ClpC/MecB 1
Probable ATP-dependent Clp protease ATP-binding subunit 6
Probable chaperone protein ClpB 1 1
Probable chaperone protein ClpB 2 1
Protein SMAX1-LIKE 6 1
Protein SMAX1-like 1
Protein SUPPRESSOR OF MAX2 1 1
Putative chaperone protein ClpB2, chloroplastic 1

Protein length

Min length 895
Max length 906
Mean length (sd) 904.0 (4.1)
Median length 906.0

Protein length distribution