Orthogroup:group_428



Homologs in group_428

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00255 FBDBKF_00255 Morganella morganii S1 - Helix-turn-helix transcriptional regulator
EHELCC_01290 EHELCC_01290 Morganella morganii S2 - Helix-turn-helix transcriptional regulator
NLDBIP_02170 NLDBIP_02170 Morganella morganii S4 - Helix-turn-helix transcriptional regulator
LHKJJB_03685 LHKJJB_03685 Morganella morganii S3 - Helix-turn-helix transcriptional regulator
HKOGLL_03360 HKOGLL_03360 Morganella morganii S5 - Helix-turn-helix transcriptional regulator
PMI_RS07475 PMI_RS07475 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS08455 PMI_RS08455 Proteus mirabilis HI4320 - S24 family peptidase

Distribution of group_428 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_428 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_428

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_428.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 7

Product

# Product Occurence
1 Helix-turn-helix transcriptional regulator 5
2 helix-turn-helix transcriptional regulator 1
3 S24 family peptidase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2932 7 X Mobilome: prophages, transposons (X) Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00717 7 Peptidase S24-like
PF01381 6 Helix-turn-helix

Annotations of the 12 SwissProt hits

Annotation Number of occurrences
26 kDa repressor protein 1
HTH-type transcriptional regulator PrtR 1
HTH-type transcriptional regulator RdgA 1
HTH-type transcriptional regulator for conjugative element R391 1
HTH-type transcriptional regulator for conjugative element SXT 1
HTH-type transcriptional regulator for conjugative element pMERPH 1
Regulatory protein cro 1
Repressor protein CI 2
Repressor protein CI (Fragment) 1
Uncharacterized HTH-type transcriptional regulator HI_1476 1
Uncharacterized HTH-type transcriptional regulator MTH_1328 1

Protein length

Min length 228
Max length 245
Mean length (sd) 230.7 (6.3)
Median length 228.0

Protein length distribution