Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K03559, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.
KO part of 0 pathways
KO part of 0 modules
Occurence in the database
K03559 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1508 | PMI_RS02860 | 628905 | 629330 | 1 | tolR | colicin uptake protein TolR | Proteus mirabilis HI4320 |
1 | group_1121 | PMI_RS00145 | 51115 | 51543 | 1 | exbD | TonB system transport protein ExbD | Proteus mirabilis HI4320 |
2 | group_1508 | FBDBKF_09750 | 46571 | 46996 | -1 | tolR | colicin uptake protein TolR | Morganella morganii S1 |
3 | group_1508 | EHELCC_04550 | 238536 | 238961 | -1 | tolR | colicin uptake protein TolR | Morganella morganii S2 |
4 | group_1508 | NLDBIP_04550 | 238332 | 238757 | -1 | tolR | colicin uptake protein TolR | Morganella morganii S4 |
5 | group_1508 | LHKJJB_14080 | 96621 | 97046 | 1 | tolR | colicin uptake protein TolR | Morganella morganii S3 |
6 | group_1508 | HKOGLL_12455 | 47352 | 47777 | -1 | tolR | colicin uptake protein TolR | Morganella morganii S5 |
7 | group_1121 | FBDBKF_06390 | 113312 | 113734 | -1 | exbD | TonB system transport protein ExbD | Morganella morganii S1 |
8 | group_1121 | EHELCC_09435 | 113884 | 114306 | -1 | exbD | TonB system transport protein ExbD | Morganella morganii S2 |
9 | group_1121 | NLDBIP_09815 | 113884 | 114306 | -1 | exbD | TonB system transport protein ExbD | Morganella morganii S4 |
10 | group_1121 | LHKJJB_07940 | 102932 | 103354 | 1 | exbD | TonB system transport protein ExbD | Morganella morganii S3 |
11 | group_1121 | HKOGLL_07490 | 102932 | 103354 | 1 | exbD | TonB system transport protein ExbD | Morganella morganii S5 |
12 | group_1508 | F4V73_RS00590 | 125618 | 126043 | 1 | tolR | colicin uptake protein TolR | Morganella psychrotolerans |
13 | group_1121 | F4V73_RS15535 | 100314 | 100736 | 1 | exbD | TonB system transport protein ExbD | Morganella psychrotolerans |