Orthogroup:group_1556


Homologs in group_1556

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10080 FBDBKF_10080 Morganella morganii S1 mrdA peptidoglycan DD-transpeptidase MrdA
EHELCC_04880 EHELCC_04880 Morganella morganii S2 mrdA peptidoglycan DD-transpeptidase MrdA
NLDBIP_04880 NLDBIP_04880 Morganella morganii S4 mrdA peptidoglycan DD-transpeptidase MrdA
LHKJJB_13750 LHKJJB_13750 Morganella morganii S3 mrdA peptidoglycan DD-transpeptidase MrdA
HKOGLL_12785 HKOGLL_12785 Morganella morganii S5 mrdA peptidoglycan DD-transpeptidase MrdA
F4V73_RS00255 F4V73_RS00255 Morganella psychrotolerans mrdA peptidoglycan DD-transpeptidase MrdA
PMI_RS02100 PMI_RS02100 Proteus mirabilis HI4320 mrdA peptidoglycan DD-transpeptidase MrdA

Distribution of group_1556 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1556 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1556

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1556.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mrdA 7

Product

# Product Occurence
1 peptidoglycan DD-transpeptidase MrdA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0768 7 DM Cell cycle control, cell division, chromosome partitioning (D)
Cell wall/membrane/envelope biogenesis (M)		 Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05515 7 penicillin-binding protein 2 [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways
beta-Lactam resistance		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00905 7 Penicillin binding protein transpeptidase domain
PF03717 7 Penicillin-binding Protein dimerisation domain

Annotations of the 45 SwissProt hits

Annotation Number of occurrences
Beta-lactam-inducible penicillin-binding protein 1
Penicillin-binding protein 1A 6
Penicillin-binding protein 2A 1
Penicillin-binding protein 2B 4
Penicillin-binding protein 2X 1
Penicillin-binding protein 2x 1
Penicillin-binding protein 3 1
Penicillin-binding protein 4B 1
Penicillin-binding protein H 1
Penicillin-binding protein PbpB 2
Peptidoglycan D,D-transpeptidase FtsI 7
Peptidoglycan D,D-transpeptidase FtsI homolog 3
Peptidoglycan D,D-transpeptidase MrdA 6
Peptidoglycan D,D-transpeptidase PbpA 3
Probable peptidoglycan D,D-transpeptidase FtsI 1
Probable peptidoglycan D,D-transpeptidase PbpC 1
Probable peptidoglycan D,D-transpeptidase PenA 3
Probable peptidoglycan D,D-transpeptidase PenA (Fragment) 1
Stage V sporulation protein D 1

Protein length

Min length 626
Max length 643
Mean length (sd) 638.9 (7.2)
Median length 643.0

Protein length distribution