Homologs in group_1508

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09750 FBDBKF_09750 92.2 Morganella morganii S1 tolR colicin uptake protein TolR
EHELCC_04550 EHELCC_04550 92.2 Morganella morganii S2 tolR colicin uptake protein TolR
NLDBIP_04550 NLDBIP_04550 92.2 Morganella morganii S4 tolR colicin uptake protein TolR
LHKJJB_14080 LHKJJB_14080 92.2 Morganella morganii S3 tolR colicin uptake protein TolR
HKOGLL_12455 HKOGLL_12455 92.2 Morganella morganii S5 tolR colicin uptake protein TolR
PMI_RS02860 PMI_RS02860 72.3 Proteus mirabilis HI4320 tolR colicin uptake protein TolR

Distribution of the homologs in the orthogroup group_1508

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1508

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABV9 2.35e-60 185 75 0 132 3 tolR Tol-Pal system protein TolR Shigella flexneri
P0ABV6 2.35e-60 185 75 0 132 1 tolR Tol-Pal system protein TolR Escherichia coli (strain K12)
P0ABV7 2.35e-60 185 75 0 132 3 tolR Tol-Pal system protein TolR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABV8 2.35e-60 185 75 0 132 3 tolR Tol-Pal system protein TolR Escherichia coli O157:H7
P43769 6.53e-47 151 59 0 137 1 tolR Tol-Pal system protein TolR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P50599 7.4e-21 85 36 2 145 3 tolR Tol-Pal system protein TolR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O06434 4.75e-13 65 31 3 129 3 exbD Biopolymer transport protein ExbD Neisseria gonorrhoeae
P0A0S0 2.37e-12 63 30 3 129 3 exbD Biopolymer transport protein ExbD Neisseria meningitidis serogroup C
P0A0R9 2.37e-12 63 30 3 129 3 exbD Biopolymer transport protein ExbD Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P0A0R8 2.37e-12 63 30 3 129 3 exbD Biopolymer transport protein ExbD Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q05606 8.56e-10 56 30 3 131 3 exbD Biopolymer transport protein ExbD Pseudomonas putida
P72203 1.13e-08 53 32 5 127 3 exbD Biopolymer transport protein ExbD Mannheimia haemolytica
P0ABV5 2.39e-08 52 29 3 123 3 exbD Biopolymer transport protein ExbD Shigella flexneri
P0ABV2 2.39e-08 52 29 3 123 1 exbD Biopolymer transport protein ExbD Escherichia coli (strain K12)
P0ABV3 2.39e-08 52 29 3 123 3 exbD Biopolymer transport protein ExbD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABV4 2.39e-08 52 29 3 123 3 exbD Biopolymer transport protein ExbD Escherichia coli O157:H7
Q9ZK84 1.24e-07 50 29 4 136 3 jhp_1057 Putative biopolymer transport protein ExbD-like 1 Helicobacter pylori (strain J99 / ATCC 700824)
O51809 1.61e-07 50 29 5 128 3 exbD Biopolymer transport protein ExbD Haemophilus ducreyi (strain 35000HP / ATCC 700724)
O25754 1.84e-07 50 29 4 136 3 HP_1129 Putative biopolymer transport protein ExbD-like 1 Helicobacter pylori (strain ATCC 700392 / 26695)
P0C7M0 2.43e-07 50 55 0 38 3 exbD1 Biopolymer transport protein exbD1 Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
B0RLE7 2.43e-07 50 55 0 38 3 exbD1 Biopolymer transport protein exbD1 Xanthomonas campestris pv. campestris (strain B100)
P0C7I9 1.29e-06 48 48 0 47 3 exbD2 Biopolymer transport protein exbD2 Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
B0RLE8 1.29e-06 48 48 0 47 3 exbD2 Biopolymer transport protein exbD2 Xanthomonas campestris pv. campestris (strain B100)
Q9ZJP5 2.2e-06 47 26 3 126 3 exbD Biopolymer transport protein ExbD Helicobacter pylori (strain J99 / ATCC 700824)
O67694 3.74e-06 46 27 4 128 3 exbD Biopolymer transport protein ExbD Aquifex aeolicus (strain VF5)
O25898 5.06e-06 46 26 3 126 3 exbD Biopolymer transport protein ExbD Helicobacter pylori (strain ATCC 700392 / 26695)
P43009 0.000276 42 42 1 47 3 exbD Biopolymer transport protein ExbD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00590
Feature type CDS
Gene tolR
Product colicin uptake protein TolR
Location 125618 - 126043 (strand: 1)
Length 426 (nucleotides) / 141 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1508
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02472 Biopolymer transport protein ExbD/TolR

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0848 Intracellular trafficking, secretion, and vesicular transport (U) U Biopolymer transport protein ExbD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03559 biopolymer transport protein ExbD - -

Protein Sequence

MARQRRHKRELKSEINIVPLLDVLLVLLLIFMATAPIISQSVEVDLPDASDSQAVSTNDNPPIILEVSGVGQYTLVVKQDRLELLPEEQIIAEARARLAEDPKTIFLVGGAKDVPYEEIINGLNILKQAGVKSVGLMTKPM

Flanking regions ( +/- flanking 50bp)

CACCGCCAGGCGTTTGCATCTGCTGATAAGAAATAAGGCCGGAGATTATTATGGCACGTCAACGCAGACACAAGCGGGAGCTGAAATCTGAAATTAACATTGTTCCTTTACTGGACGTGTTGCTTGTGTTGTTGCTTATCTTCATGGCAACGGCGCCGATAATCAGTCAGAGTGTGGAAGTGGATCTCCCTGATGCCTCCGATTCTCAGGCGGTATCGACCAATGATAATCCGCCGATTATTCTGGAAGTATCCGGAGTGGGGCAATATACCCTGGTGGTAAAACAGGATCGTCTGGAGTTACTGCCGGAAGAACAAATTATTGCTGAGGCAAGAGCACGCCTGGCGGAAGATCCGAAAACGATTTTCCTGGTCGGCGGAGCTAAAGATGTGCCTTATGAAGAGATTATTAATGGTCTGAATATTCTGAAACAGGCCGGAGTGAAATCTGTAGGTCTGATGACGAAACCGATGTAAGGTTTGTTATGCCGTTGTTTTCACTCAGTGTGTTAGGGAATTAAGCGTGA