Orthogroup:group_1183


Homologs in group_1183

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06820 FBDBKF_06820 Morganella morganii S1 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family
EHELCC_04150 EHELCC_04150 Morganella morganii S2 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family
NLDBIP_04150 NLDBIP_04150 Morganella morganii S4 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family
LHKJJB_09980 LHKJJB_09980 Morganella morganii S3 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family
HKOGLL_08995 HKOGLL_08995 Morganella morganii S5 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family
F4V73_RS00960 F4V73_RS00960 Morganella psychrotolerans - CidA/LrgA family protein
PMI_RS03180 PMI_RS03180 Proteus mirabilis HI4320 - CidA/LrgA family protein

Distribution of group_1183 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1183 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1183

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1183.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yohJ 5
2 - 2

Product

# Product Occurence
1 Putative effector of murein hydrolase LrgA, UPF0299 family 5
2 CidA/LrgA family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1380 7 R General function prediction only (R) Putative effector of murein hydrolase LrgA, UPF0299 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06518 7 holin-like protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03788 7 LrgA family

Annotations of the 132 SwissProt hits

Annotation Number of occurrences
Antiholin-like protein LrgA 30
Holin-like protein CidA 26
Holin-like protein CidA 1 2
Holin-like protein CidA 2 2
UPF0299 membrane protein CGSHiEE_04225 1
UPF0299 membrane protein CGSHiGG_01475 1
UPF0299 membrane protein CKO_00648 1
UPF0299 membrane protein ECA2828 1
UPF0299 membrane protein ETA_12980 1
UPF0299 membrane protein Ent638_2744 1
UPF0299 membrane protein HI_1297 1
UPF0299 membrane protein KPK_1586 1
UPF0299 membrane protein KPN78578_25390 1
UPF0299 membrane protein MS1271 1
UPF0299 membrane protein NTHI1827 1
UPF0299 membrane protein PC1_1498 1
UPF0299 membrane protein PM0880 1
UPF0299 membrane protein Spro_1570 1
UPF0299 membrane protein VC0395_A0854/VC395_1352 1
UPF0299 membrane protein VCM66_1188 1
UPF0299 membrane protein VC_1233 1
UPF0299 membrane protein VIBHAR_02118 1
UPF0299 membrane protein VP1300 1
UPF0299 membrane protein VV1471 1
UPF0299 membrane protein YE2790 1
UPF0299 membrane protein YPA_0809 1
UPF0299 membrane protein YPDSF_1460 1
UPF0299 membrane protein YPK_2559 1
UPF0299 membrane protein YPN_2465 1
UPF0299 membrane protein YPO1514/y2654/YP_1404 1
UPF0299 membrane protein YPTB1529 1
UPF0299 membrane protein YPTS_1639 1
UPF0299 membrane protein YohJ 41
UPF0299 membrane protein YpAngola_A3025 1
UPF0299 membrane protein YpsIP31758_2460 1
UPF0299 membrane protein plu1549 1

Protein length

Min length 148
Max length 155
Mean length (sd) 150.4 (2.1)
Median length 150.0

Protein length distribution