Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K03111
Protein list: lists the 25 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_442 | FBDBKF_00315 | 43090 | 43554 | 1 | Single-stranded DNA-binding protein | Morganella morganii S1 | |
1 | group_442 | EHELCC_01230 | 265314 | 265778 | -1 | Single-stranded DNA-binding protein | Morganella morganii S2 | |
2 | group_442 | NLDBIP_02230 | 414358 | 414822 | 1 | Single-stranded DNA-binding protein | Morganella morganii S4 | |
3 | group_442 | LHKJJB_03745 | 21599 | 22063 | 1 | Single-stranded DNA-binding protein | Morganella morganii S3 | |
4 | group_442 | HKOGLL_03300 | 265519 | 265983 | -1 | Single-stranded DNA-binding protein | Morganella morganii S5 | |
5 | group_107 | FBDBKF_00360 | 46239 | 47390 | 1 | Integrase | Morganella morganii S1 | |
6 | group_107 | EHELCC_01185 | 261478 | 262629 | -1 | Integrase | Morganella morganii S2 | |
7 | group_107 | NLDBIP_02275 | 417507 | 418658 | 1 | Integrase | Morganella morganii S4 | |
8 | group_107 | LHKJJB_03790 | 24748 | 25899 | 1 | Integrase | Morganella morganii S3 | |
9 | group_107 | HKOGLL_03255 | 261683 | 262834 | -1 | Integrase | Morganella morganii S5 | |
10 | group_107 | FBDBKF_11145 | 54874 | 56037 | -1 | xerD | Site-specific recombinase XerD | Morganella morganii S1 |
11 | group_107 | EHELCC_05080 | 3431 | 4594 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S2 |
12 | group_107 | NLDBIP_05400 | 44504 | 45667 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S4 |
13 | group_107 | LHKJJB_02280 | 22028 | 23191 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S3 |
14 | group_107 | HKOGLL_15660 | 45468 | 46631 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S5 |
15 | group_443 | FBDBKF_17025 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S1 |
16 | group_443 | EHELCC_16565 | 32308 | 32826 | 1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S2 |
17 | group_443 | NLDBIP_16775 | 32308 | 32826 | 1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S4 |
18 | group_443 | LHKJJB_16695 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S3 |
19 | group_443 | HKOGLL_17660 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S5 |
20 | group_107 | F4V73_RS06340 | 1318441 | 1319592 | 1 | site-specific integrase | Morganella psychrotolerans | |
21 | group_442 | PMI_RS04420 | 987453 | 987950 | -1 | ssb | single-stranded DNA-binding protein | Proteus mirabilis HI4320 |
22 | group_443 | F4V73_RS18505 | 36585 | 37112 | -1 | single-stranded DNA-binding protein | Morganella psychrotolerans | |
23 | group_442 | PMI_RS12105 | 2676675 | 2677094 | -1 | ssb | single-stranded DNA-binding protein | Proteus mirabilis HI4320 |
24 | group_443 | PMI_RS13540 | 3004258 | 3004782 | 1 | ssb1 | single-stranded DNA-binding protein SSB1 | Proteus mirabilis HI4320 |