Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K03111, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs
within the database. 25 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.
Occurence in the database
K03111 is associated with 25 different proteins (see tab "Protein list" and "Profile") |
The 25 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_38 | PMI_RS04420 | 987453 | 987950 | -1 | ssb | single-stranded DNA-binding protein | Proteus mirabilis HI4320 |
1 | group_38 | PMI_RS12105 | 2676675 | 2677094 | -1 | ssb | single-stranded DNA-binding protein | Proteus mirabilis HI4320 |
2 | group_38 | PMI_RS13540 | 3004258 | 3004782 | 1 | ssb1 | single-stranded DNA-binding protein SSB1 | Proteus mirabilis HI4320 |
3 | group_110 | FBDBKF_11145 | 54874 | 56037 | -1 | xerD | Site-specific recombinase XerD | Morganella morganii S1 |
4 | group_110 | EHELCC_05080 | 3431 | 4594 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S2 |
5 | group_110 | NLDBIP_05400 | 44504 | 45667 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S4 |
6 | group_110 | LHKJJB_02280 | 22028 | 23191 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S3 |
7 | group_110 | HKOGLL_15660 | 45468 | 46631 | 1 | xerD | Site-specific recombinase XerD | Morganella morganii S5 |
8 | group_38 | FBDBKF_00315 | 43090 | 43554 | 1 | Single-stranded DNA-binding protein | Morganella morganii S1 | |
9 | group_38 | EHELCC_01230 | 265314 | 265778 | -1 | Single-stranded DNA-binding protein | Morganella morganii S2 | |
10 | group_38 | NLDBIP_02230 | 414358 | 414822 | 1 | Single-stranded DNA-binding protein | Morganella morganii S4 | |
11 | group_38 | LHKJJB_03745 | 21599 | 22063 | 1 | Single-stranded DNA-binding protein | Morganella morganii S3 | |
12 | group_38 | HKOGLL_03300 | 265519 | 265983 | -1 | Single-stranded DNA-binding protein | Morganella morganii S5 | |
13 | group_110 | FBDBKF_00360 | 46239 | 47390 | 1 | Integrase | Morganella morganii S1 | |
14 | group_110 | EHELCC_01185 | 261478 | 262629 | -1 | Integrase | Morganella morganii S2 | |
15 | group_110 | NLDBIP_02275 | 417507 | 418658 | 1 | Integrase | Morganella morganii S4 | |
16 | group_110 | LHKJJB_03790 | 24748 | 25899 | 1 | Integrase | Morganella morganii S3 | |
17 | group_110 | HKOGLL_03255 | 261683 | 262834 | -1 | Integrase | Morganella morganii S5 | |
18 | group_38 | FBDBKF_17025 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S1 |
19 | group_38 | EHELCC_16565 | 32308 | 32826 | 1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S2 |
20 | group_38 | NLDBIP_16775 | 32308 | 32826 | 1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S4 |
21 | group_38 | LHKJJB_16695 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S3 |
22 | group_38 | HKOGLL_17660 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S5 |
23 | group_110 | F4V73_RS06340 | 1318441 | 1319592 | 1 | site-specific integrase | Morganella psychrotolerans | |
24 | group_38 | F4V73_RS18505 | 36585 | 37112 | -1 | single-stranded DNA-binding protein | Morganella psychrotolerans |