Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC4
GIs list: lists the 5 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 33 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC4 |
|---|---|
| Length | 18258 |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 3 | GI3 | Morganella morganii S4 | ZDB_523 | 10989 | 31877 | 20888 |
| 18 | GI18 | Morganella morganii S2 | ZDB_217 | 10989 | 31877 | 20888 |
| 37 | GI37 | Morganella morganii S1 | contig_18 | 87763 | 98954 | 11191 |
| 46 | GI46 | Morganella morganii S3 | ZDB_362 | 223378 | 245528 | 22150 |
| 76 | GI76 | Morganella morganii S5 | ZDB_682 | 2198 | 18372 | 16174 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 3 | group_3 | rrrD (5) | Lysozyme (19) Phage-related lysozyme (muramidase), GH24 family (5) lysozyme (3) |
| 2949 | group_2949 | alpA (5) | AlpA family phage regulatory protein (5) AlpA family transcriptional regulator (1) |
| 8 | group_8 | - | Holin (19) phage holin family protein (1) |
| 3596 | group_3596 | - | hypothetical protein (5) |
| 3597 | group_3597 | - | hypothetical protein (5) |
| 3598 | group_3598 | - | Lipoprotein (5) |
| 151 | group_151 | tnp (10) | IS3 family ISPrre1 transposase ORF A (5) IS3 family transposase ORF A (5) |
| 31 | group_31 | fimB (5) | Integrase/recombinase, includes phage integrase (5) Integrase arm-type DNA-binding domain-containing protein (5) Integrase (1) tyrosine-type recombinase/integrase (2) integrase arm-type DNA-binding domain-containing protein (1) |
| 2985 | group_2985 | - | EF-hand domain-containing protein (1) hypothetical protein (5) |
| 1973 | group_1973 | - | Transposase (5) transposase (2) |
| 3425 | group_3425 | - | hypothetical protein (5) |
| 3426 | group_3426 | - | YqaE/Pmp3 family membrane protein (5) |
| 3424 | group_3424 | - | Glycine zipper domain-containing protein (5) |
| 97 | group_97 | - | Antirestriction protein (11) antirestriction protein (1) |
| 98 | group_98 | - | DUF945 domain-containing protein (11) DUF932 domain-containing protein (1) |
| 3427 | group_3427 | - | Lipoprotein (5) |
| 3428 | group_3428 | - | Transcriptional regulator (5) |
| 3429 | group_3429 | - | Integrase catalytic domain-containing protein (5) |
| 3430 | group_3430 | - | Transposase IS4-like domain-containing protein (5) |
| 3431 | group_3431 | - | Thymidylate synthase (5) |
| 3432 | group_3432 | - | Adenylate kinase (5) |
| 3433 | group_3433 | - | 5-hmdU DNA kinase helical domain-containing protein (5) |
| 3434 | group_3434 | - | DUF1863 domain-containing protein (5) |
| 3435 | group_3435 | - | Nucleotide modification associated domain-containing protein (5) |
| 3436 | group_3436 | - | SLOG cluster3 family (5) |
| 3437 | group_3437 | - | TIR domain-containing protein (5) |
| 3438 | group_3438 | - | hypothetical protein (5) |
| 3439 | group_3439 | - | TIR domain-containing protein (5) |
| 3440 | group_3440 | - | hypothetical protein (5) |
| 3441 | group_3441 | - | Mutator family transposase (5) |
| 3442 | group_3442 | - | Inovirus Gp2 family protein (5) |
| 123 | group_123 | - | DUF2570 domain-containing protein (10) hypothetical protein (1) |
| 125 | group_125 | - | IS3 family transposase (6) Integrase core domain (5) |
