Orthogroup:group_3


Homologs in group_3

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25 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14600 FBDBKF_14600 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_15405 EHELCC_15405 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_15935 NLDBIP_15935 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_15905 LHKJJB_15905 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_15025 HKOGLL_15025 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS01040 F4V73_RS01040 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01065 F4V73_RS01065 Morganella psychrotolerans - molecular chaperone
F4V73_RS01680 F4V73_RS01680 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01855 F4V73_RS01855 Morganella psychrotolerans - molecular chaperone
F4V73_RS05995 F4V73_RS05995 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS07395 F4V73_RS07395 Morganella psychrotolerans - molecular chaperone
F4V73_RS08430 F4V73_RS08430 Morganella psychrotolerans - molecular chaperone
F4V73_RS08450 F4V73_RS08450 Morganella psychrotolerans - molecular chaperone
F4V73_RS08455 F4V73_RS08455 Morganella psychrotolerans - molecular chaperone
F4V73_RS09380 F4V73_RS09380 Morganella psychrotolerans - molecular chaperone
F4V73_RS10245 F4V73_RS10245 Morganella psychrotolerans - molecular chaperone
F4V73_RS10260 F4V73_RS10260 Morganella psychrotolerans - molecular chaperone
F4V73_RS10275 F4V73_RS10275 Morganella psychrotolerans - molecular chaperone
F4V73_RS10895 F4V73_RS10895 Morganella psychrotolerans - molecular chaperone
F4V73_RS12585 F4V73_RS12585 Morganella psychrotolerans - molecular chaperone
F4V73_RS13305 F4V73_RS13305 Morganella psychrotolerans - molecular chaperone
F4V73_RS13315 F4V73_RS13315 Morganella psychrotolerans - molecular chaperone
F4V73_RS13325 F4V73_RS13325 Morganella psychrotolerans - molecular chaperone
PMI_RS12530 PMI_RS12530 Proteus mirabilis HI4320 - molecular chaperone
PMI_RS16665 PMI_RS16665 Proteus mirabilis HI4320 - molecular chaperone

Distribution of group_3 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3

Orthogroup content: 25 members

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This page summarizes the annotation of all members of the orthologous group group_3.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fimC 5
2 - 20

Product

# Product Occurence
1 P pilus assembly protein, chaperone PapD 5
2 fimbria/pilus periplasmic chaperone 3
3 molecular chaperone 17

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3121 25 W Extracellular structures (W) P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07346 4 fimbrial chaperone protein Two-component system -
K15540 1 chaperone protein EcpD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00345 25 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 24 Pili assembly chaperone PapD, C-terminal domain

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
Chaperone protein AfaB 1
Chaperone protein AggD 1
Chaperone protein CS3-1 1
Chaperone protein ClpE 1
Chaperone protein CssC 2
Chaperone protein FaeE 1
Chaperone protein FanE 1
Chaperone protein FimB/FhaD 1
Chaperone protein FimC 3
Chaperone protein FocC 2
Chaperone protein HifB 2
Chaperone protein LpfB 1
Chaperone protein MrkB 1
Chaperone protein MyfB 1
Chaperone protein NfaE 1
Chaperone protein PapD 1
Chaperone protein PmfD 1
Chaperone protein PrsD (Fragment) 1
Chaperone protein PsaB 2
Chaperone protein SefB 1
Chaperone protein caf1M 1
Probable fimbrial chaperone LpfB 1
Probable fimbrial chaperone SfmC 1
Probable fimbrial chaperone YadV 1
Probable fimbrial chaperone YehC 1
Probable fimbrial chaperone YfcS 1
Probable fimbrial chaperone YraI 1
Probable fimbrial chaperone protein ElfD 2
Uncharacterized fimbrial chaperone YbgP 1
Uncharacterized fimbrial chaperone YcbF 1
Uncharacterized fimbrial chaperone YhcA 1
Uncharacterized fimbrial chaperone YqiH 1

Protein length

Min length 219
Max length 271
Mean length (sd) 236.0 (14.0)
Median length 236.0

Protein length distribution