COG4197


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4197, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily
Function(s) descr. Transcription (K)

Occurence in the database

COG4197 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3338 FBDBKF_11245 64851 65078 1 Cro/Cl family transcriptional regulator Morganella morganii S1
1 group_3699 FBDBKF_12410 6580 6810 -1 Helix-turn-helix domain-containing protein Morganella morganii S1
2 group_3931 FBDBKF_12895 82397 82642 -1 Cro/Cl family transcriptional regulator Morganella morganii S1
3 group_3338 EHELCC_17970 35637 35864 -1 Cro/Cl family transcriptional regulator Morganella morganii S2
4 group_3338 NLDBIP_05300 35463 35690 -1 Cro/Cl family transcriptional regulator Morganella morganii S4
5 group_3338 LHKJJB_02180 12987 13214 -1 Cro/Cl family transcriptional regulator Morganella morganii S3
6 group_3338 HKOGLL_15560 36427 36654 -1 Cro/Cl family transcriptional regulator Morganella morganii S5
7 group_4329 PMI_RS02385 537436 537621 1 Cro/CI family transcriptional regulator Proteus mirabilis HI4320
8 group_3699 PMI_RS04440 990511 990750 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
9 group_3699 PMI_RS11990 2652110 2652361 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320