Homologs in group_3753

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS11990 PMI_RS11990 37.5 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_3753

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3753

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76063 8.98e-06 43 35 1 64 3 ydaS Uncharacterized protein YdaS Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12410
Feature type CDS
Gene -
Product Helix-turn-helix domain-containing protein
Location 6580 - 6810 (strand: -1)
Length 231 (nucleotides) / 76 (amino acids)
In genomic island -

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3753
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF15943 Bacterial toxin YdaS

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4197 Transcription (K) K DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily

Protein Sequence

MKNKAIQKAISIAGGQQKLATLCGVSQPTVWRWLHGGGIDARFVMLIVKATNNEVSPLDIRPDLTDLMAMNRPQTE

Flanking regions ( +/- flanking 50bp)

TTAATACTCATTGCTATTATCCTATTGTGATTATACGAATGAGGTTAAACATGAAAAATAAAGCGATCCAAAAGGCAATCAGTATCGCTGGTGGACAACAGAAACTCGCCACGTTATGCGGTGTCAGTCAGCCTACAGTATGGCGCTGGCTTCATGGTGGCGGTATTGATGCCCGATTCGTGATGCTGATCGTCAAAGCCACCAACAATGAAGTCTCCCCCCTAGATATTCGCCCTGATTTAACCGACTTAATGGCGATGAATCGACCACAGACAGAGTAAGGATACATGGTGTCTATGGATGAGGTAACTACAACCCAATCAGAAAGCGA