COG2956


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2956, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 24 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2956 is associated with 24 different proteins (see tab "Protein list" and "Profile")
The 24 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_935 FBDBKF_05080 21246 22415 -1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S1
1 group_312 FBDBKF_09290 91117 91581 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S1
2 group_2142 FBDBKF_16095 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S1
3 group_312 EHELCC_10120 54523 54987 1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S2
4 group_935 EHELCC_12510 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S2
5 group_2142 EHELCC_16130 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S2
6 group_312 NLDBIP_10465 32794 33258 1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S4
7 group_935 NLDBIP_12850 159034 160203 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S4
8 group_2142 NLDBIP_17210 53094 54446 1 DUF560 domain-containing protein Morganella morganii S4
9 group_312 LHKJJB_10890 158270 158734 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S3
10 group_935 LHKJJB_12710 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S3
11 group_2142 LHKJJB_17130 56196 57548 1 DUF560 domain-containing protein Morganella morganii S3
12 group_935 HKOGLL_11325 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S5
13 group_312 HKOGLL_13950 91571 92035 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S5
14 group_2142 HKOGLL_16710 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S5
15 group_935 F4V73_RS05535 1176313 1177482 -1 lapB lipopolysaccharide assembly protein LapB Morganella psychrotolerans
16 group_312 F4V73_RS08290 1719183 1719677 -1 SycD/LcrH family type III secretion system chaperone Morganella psychrotolerans
17 group_312 F4V73_RS10675 263878 264348 1 tetratricopeptide repeat protein Morganella psychrotolerans
18 group_2142 F4V73_RS17520 137609 138724 1 surface lipoprotein assembly modifier Morganella psychrotolerans
19 group_935 PMI_RS06340 1389177 1390346 -1 lapB lipopolysaccharide assembly protein LapB Proteus mirabilis HI4320
20 group_3902 PMI_RS10350 2273728 2277003 1 bcsC cellulose synthase complex outer membrane protein BcsC Proteus mirabilis HI4320
21 group_312 PMI_RS13225 2937148 2937666 -1 sicA type III secretion system translocator chaperone SicA Proteus mirabilis HI4320
22 group_3902 PMI_RS15340 3404776 3408462 1 cellulose biosynthesis protein BcsC Proteus mirabilis HI4320
23 group_2142 PMI_RS15440 3430155 3431507 1 surface lipoprotein assembly modifier Proteus mirabilis HI4320