COG2956
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2956, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 24 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain |
Function(s) descr. |
Cell wall/membrane/envelope biogenesis (M) |
Occurence in the database
COG2956 is associated with 24 different proteins (see tab "Protein list" and "Profile") |
The 24 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_935 |
FBDBKF_05080 |
21246 |
22415 |
-1 |
lapB |
lipopolysaccharide assembly protein LapB |
Morganella morganii S1 |
1 |
group_312 |
FBDBKF_09290 |
91117 |
91581 |
-1 |
tadD |
Flp pilus assembly protein TadD, contains TPR repeats |
Morganella morganii S1 |
2 |
group_2142 |
FBDBKF_16095 |
7724 |
9076 |
-1 |
|
DUF560 domain-containing protein |
Morganella morganii S1 |
3 |
group_312 |
EHELCC_10120 |
54523 |
54987 |
1 |
tadD |
Flp pilus assembly protein TadD, contains TPR repeats |
Morganella morganii S2 |
4 |
group_935 |
EHELCC_12510 |
159079 |
160248 |
1 |
lapB |
lipopolysaccharide assembly protein LapB |
Morganella morganii S2 |
5 |
group_2142 |
EHELCC_16130 |
7724 |
9076 |
-1 |
|
DUF560 domain-containing protein |
Morganella morganii S2 |
6 |
group_312 |
NLDBIP_10465 |
32794 |
33258 |
1 |
tadD |
Flp pilus assembly protein TadD, contains TPR repeats |
Morganella morganii S4 |
7 |
group_935 |
NLDBIP_12850 |
159034 |
160203 |
1 |
lapB |
lipopolysaccharide assembly protein LapB |
Morganella morganii S4 |
8 |
group_2142 |
NLDBIP_17210 |
53094 |
54446 |
1 |
|
DUF560 domain-containing protein |
Morganella morganii S4 |
9 |
group_312 |
LHKJJB_10890 |
158270 |
158734 |
-1 |
tadD |
Flp pilus assembly protein TadD, contains TPR repeats |
Morganella morganii S3 |
10 |
group_935 |
LHKJJB_12710 |
159079 |
160248 |
1 |
lapB |
lipopolysaccharide assembly protein LapB |
Morganella morganii S3 |
11 |
group_2142 |
LHKJJB_17130 |
56196 |
57548 |
1 |
|
DUF560 domain-containing protein |
Morganella morganii S3 |
12 |
group_935 |
HKOGLL_11325 |
159079 |
160248 |
1 |
lapB |
lipopolysaccharide assembly protein LapB |
Morganella morganii S5 |
13 |
group_312 |
HKOGLL_13950 |
91571 |
92035 |
-1 |
tadD |
Flp pilus assembly protein TadD, contains TPR repeats |
Morganella morganii S5 |
14 |
group_2142 |
HKOGLL_16710 |
7724 |
9076 |
-1 |
|
DUF560 domain-containing protein |
Morganella morganii S5 |
15 |
group_935 |
F4V73_RS05535 |
1176313 |
1177482 |
-1 |
lapB |
lipopolysaccharide assembly protein LapB |
Morganella psychrotolerans |
16 |
group_312 |
F4V73_RS08290 |
1719183 |
1719677 |
-1 |
|
SycD/LcrH family type III secretion system chaperone |
Morganella psychrotolerans |
17 |
group_312 |
F4V73_RS10675 |
263878 |
264348 |
1 |
|
tetratricopeptide repeat protein |
Morganella psychrotolerans |
18 |
group_2142 |
F4V73_RS17520 |
137609 |
138724 |
1 |
|
surface lipoprotein assembly modifier |
Morganella psychrotolerans |
19 |
group_935 |
PMI_RS06340 |
1389177 |
1390346 |
-1 |
lapB |
lipopolysaccharide assembly protein LapB |
Proteus mirabilis HI4320 |
20 |
group_3902 |
PMI_RS10350 |
2273728 |
2277003 |
1 |
bcsC |
cellulose synthase complex outer membrane protein BcsC |
Proteus mirabilis HI4320 |
21 |
group_312 |
PMI_RS13225 |
2937148 |
2937666 |
-1 |
sicA |
type III secretion system translocator chaperone SicA |
Proteus mirabilis HI4320 |
22 |
group_3902 |
PMI_RS15340 |
3404776 |
3408462 |
1 |
|
cellulose biosynthesis protein BcsC |
Proteus mirabilis HI4320 |
23 |
group_2142 |
PMI_RS15440 |
3430155 |
3431507 |
1 |
|
surface lipoprotein assembly modifier |
Proteus mirabilis HI4320 |