COG2956

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG2956
Protein list: lists the 24 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.

Description

Description Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2956 is associated with 24 different proteins
The 24 proteins are classified into 4 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1002 FBDBKF_05080 21246 22415 -1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S1
1 group_283 FBDBKF_09290 91117 91581 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S1
2 group_2177 FBDBKF_16095 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S1
3 group_283 EHELCC_10120 54523 54987 1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S2
4 group_1002 EHELCC_12510 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S2
5 group_2177 EHELCC_16130 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S2
6 group_283 NLDBIP_10465 32794 33258 1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S4
7 group_1002 NLDBIP_12850 159034 160203 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S4
8 group_2177 NLDBIP_17210 53094 54446 1 DUF560 domain-containing protein Morganella morganii S4
9 group_283 LHKJJB_10890 158270 158734 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S3
10 group_1002 LHKJJB_12710 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S3
11 group_2177 LHKJJB_17130 56196 57548 1 DUF560 domain-containing protein Morganella morganii S3
12 group_1002 HKOGLL_11325 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S5
13 group_283 HKOGLL_13950 91571 92035 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S5
14 group_2177 HKOGLL_16710 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S5
15 group_1002 F4V73_RS05535 1176313 1177482 -1 lapB lipopolysaccharide assembly protein LapB Morganella psychrotolerans
16 group_283 F4V73_RS08290 1719183 1719677 -1 SycD/LcrH family type III secretion system chaperone Morganella psychrotolerans
17 group_283 F4V73_RS10675 263878 264348 1 tetratricopeptide repeat protein Morganella psychrotolerans
18 group_2177 F4V73_RS17520 137609 138724 1 surface lipoprotein assembly modifier Morganella psychrotolerans
19 group_1002 PMI_RS06340 1389177 1390346 -1 lapB lipopolysaccharide assembly protein LapB Proteus mirabilis HI4320
20 group_3911 PMI_RS10350 2273728 2277003 1 bcsC cellulose synthase complex outer membrane protein BcsC Proteus mirabilis HI4320
21 group_283 PMI_RS13225 2937148 2937666 -1 sicA type III secretion system translocator chaperone SicA Proteus mirabilis HI4320
22 group_3911 PMI_RS15340 3404776 3408462 1 cellulose biosynthesis protein BcsC Proteus mirabilis HI4320
23 group_2177 PMI_RS15440 3430155 3431507 1 surface lipoprotein assembly modifier Proteus mirabilis HI4320