Homologs in group_312

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09290 FBDBKF_09290 43.8 Morganella morganii S1 tadD Flp pilus assembly protein TadD, contains TPR repeats
EHELCC_10120 EHELCC_10120 43.8 Morganella morganii S2 tadD Flp pilus assembly protein TadD, contains TPR repeats
NLDBIP_10465 NLDBIP_10465 43.8 Morganella morganii S4 tadD Flp pilus assembly protein TadD, contains TPR repeats
LHKJJB_10890 LHKJJB_10890 43.8 Morganella morganii S3 tadD Flp pilus assembly protein TadD, contains TPR repeats
HKOGLL_13950 HKOGLL_13950 43.8 Morganella morganii S5 tadD Flp pilus assembly protein TadD, contains TPR repeats
F4V73_RS08290 F4V73_RS08290 29.3 Morganella psychrotolerans - SycD/LcrH family type III secretion system chaperone
F4V73_RS10675 F4V73_RS10675 40.7 Morganella psychrotolerans - tetratricopeptide repeat protein

Distribution of the homologs in the orthogroup group_312

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_312

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A2U4 3.51e-53 169 53 0 147 1 ipgC Chaperone protein IpgC Shigella flexneri
P0A2U5 3.51e-53 169 53 0 147 3 ipgC Chaperone protein IpgC Shigella dysenteriae
P69066 6.82e-51 163 50 1 157 1 sicA Chaperone protein SicA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69065 6.82e-51 163 50 1 157 3 sicA Chaperone protein SicA Salmonella typhi
P69064 6.82e-51 163 50 1 157 3 sicA Chaperone protein SicA Salmonella dublin
Q46787 2.53e-25 98 35 1 145 3 ygeG Uncharacterized protein YgeG Escherichia coli (strain K12)
P21207 4.97e-15 72 31 2 153 3 lcrH Low calcium response locus protein H Yersinia pestis
P23995 3.96e-14 69 30 2 153 3 lcrH Low calcium response locus protein H Yersinia pseudotuberculosis serotype I (strain IP32953)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13225
Feature type CDS
Gene sicA
Product type III secretion system translocator chaperone SicA
Location 2937148 - 2937666 (strand: -1)
Length 519 (nucleotides) / 172 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_312
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF07720 Tetratricopeptide repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2956 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain

Protein Sequence

MSAYEKMSEKELDQLANYIVSIVQNGASIKDESEIPDGFMEGIYSFAYDFYQKGKLDEAEAIFKFLCLYDFYNVDYIMGLAAVNQLKKQYQAAIDLYALAYLNAKNDYRPVFYAGQCNLSIGEKEKAKYCFHQVAQNINDQTIKEKANSYLELLKDIPLVVLNKEEEKEEKE

Flanking regions ( +/- flanking 50bp)

AGTTAGAATATTATTATTAATTATTCATCATAGATGAAAGGATTATCATAATGTCAGCATATGAAAAAATGTCAGAAAAAGAATTAGATCAGCTCGCAAACTACATTGTTTCTATTGTACAAAATGGCGCATCTATCAAAGATGAAAGTGAAATTCCAGATGGATTTATGGAAGGGATTTATTCATTTGCGTATGATTTTTATCAGAAAGGGAAGTTAGATGAAGCTGAGGCGATTTTTAAGTTTTTATGTCTCTATGATTTTTATAATGTTGATTACATTATGGGACTTGCTGCAGTTAATCAATTAAAAAAGCAATATCAAGCAGCTATCGATCTTTATGCTTTAGCTTATCTAAATGCTAAAAATGATTATCGACCTGTTTTTTATGCTGGACAATGTAATTTATCAATTGGTGAAAAAGAAAAAGCTAAATATTGTTTTCATCAGGTGGCTCAAAATATTAATGATCAAACGATAAAAGAGAAGGCTAATAGCTATTTAGAGCTATTAAAAGATATTCCTCTTGTTGTCCTTAATAAAGAGGAAGAAAAGGAAGAAAAGGAATAATAGTATGAATAAGATTAATCAAAGTAATGAACATAGTAGATTAGCTTCGC