Homologs in group_312

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09290 FBDBKF_09290 28.8 Morganella morganii S1 tadD Flp pilus assembly protein TadD, contains TPR repeats
EHELCC_10120 EHELCC_10120 28.8 Morganella morganii S2 tadD Flp pilus assembly protein TadD, contains TPR repeats
NLDBIP_10465 NLDBIP_10465 28.8 Morganella morganii S4 tadD Flp pilus assembly protein TadD, contains TPR repeats
LHKJJB_10890 LHKJJB_10890 28.8 Morganella morganii S3 tadD Flp pilus assembly protein TadD, contains TPR repeats
HKOGLL_13950 HKOGLL_13950 28.8 Morganella morganii S5 tadD Flp pilus assembly protein TadD, contains TPR repeats
F4V73_RS10675 F4V73_RS10675 23.4 Morganella psychrotolerans - tetratricopeptide repeat protein
PMI_RS13225 PMI_RS13225 29.3 Proteus mirabilis HI4320 sicA type III secretion system translocator chaperone SicA

Distribution of the homologs in the orthogroup group_312

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_312

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23995 7.93e-42 140 46 0 137 3 lcrH Low calcium response locus protein H Yersinia pseudotuberculosis serotype I (strain IP32953)
P21207 1.53e-40 137 45 0 137 3 lcrH Low calcium response locus protein H Yersinia pestis
P0A2U4 1.29e-19 83 32 0 125 1 ipgC Chaperone protein IpgC Shigella flexneri
P0A2U5 1.29e-19 83 32 0 125 3 ipgC Chaperone protein IpgC Shigella dysenteriae
P69066 3.32e-17 77 33 2 145 1 sicA Chaperone protein SicA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69065 3.32e-17 77 33 2 145 3 sicA Chaperone protein SicA Salmonella typhi
P69064 3.32e-17 77 33 2 145 3 sicA Chaperone protein SicA Salmonella dublin
Q46787 3.24e-09 56 29 2 123 3 ygeG Uncharacterized protein YgeG Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08290
Feature type CDS
Gene -
Product SycD/LcrH family type III secretion system chaperone
Location 1719183 - 1719677 (strand: -1)
Length 495 (nucleotides) / 164 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_312
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF07720 Tetratricopeptide repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2956 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15368 secretion system chaperone SscA - -

Protein Sequence

MDVAGNNAVETELNDFISEGGSLAMLKNISEAELEKIYAVAYDFYESGKYQDAESLFQVLCILNHYDSRFFLALGACRQHQEHYHQALETYSYASLMSPSDPRFPFHAGECLLHMKEFSTAKQAFAGAQLLAKTQPGYESLAEKAGVMLTSATEQAEAGNAKCH

Flanking regions ( +/- flanking 50bp)

ATACGTTACTTCAGGATTTATCAAGATCTCTATAATTAAAGGAAAATAACATGGATGTTGCTGGTAATAACGCAGTAGAAACAGAGCTGAATGATTTTATTTCTGAGGGTGGTTCATTAGCCATGCTGAAAAACATCTCTGAAGCTGAATTGGAAAAAATATATGCCGTTGCATATGATTTTTATGAGTCAGGTAAATATCAGGATGCGGAGAGCTTATTTCAGGTGCTGTGTATTCTTAATCATTATGATTCCCGGTTTTTTCTTGCACTAGGTGCCTGCCGTCAGCATCAGGAGCATTATCATCAGGCACTGGAAACGTACAGTTATGCATCACTGATGTCACCGTCAGATCCACGTTTTCCATTCCATGCAGGCGAGTGCTTACTTCATATGAAAGAGTTCAGTACCGCAAAACAGGCATTTGCAGGCGCGCAGTTACTGGCAAAAACACAGCCGGGTTATGAATCACTGGCAGAAAAGGCCGGCGTGATGCTGACATCTGCCACAGAGCAGGCGGAGGCAGGTAATGCAAAATGTCACTGATTTACCCGGAGTCAGAGCCGCTTTTCCGGCAGAAACCAATCCGGTGACCG