Homologs in group_1002

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_12510 EHELCC_12510 100.0 Morganella morganii S2 lapB lipopolysaccharide assembly protein LapB
NLDBIP_12850 NLDBIP_12850 100.0 Morganella morganii S4 lapB lipopolysaccharide assembly protein LapB
LHKJJB_12710 LHKJJB_12710 100.0 Morganella morganii S3 lapB lipopolysaccharide assembly protein LapB
HKOGLL_11325 HKOGLL_11325 100.0 Morganella morganii S5 lapB lipopolysaccharide assembly protein LapB
F4V73_RS05535 F4V73_RS05535 94.6 Morganella psychrotolerans lapB lipopolysaccharide assembly protein LapB
PMI_RS06340 PMI_RS06340 77.9 Proteus mirabilis HI4320 lapB lipopolysaccharide assembly protein LapB

Distribution of the homologs in the orthogroup group_1002

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1002

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB58 0.0 564 70 0 379 1 lapB Lipopolysaccharide assembly protein B Escherichia coli (strain K12)
P0AB59 0.0 564 70 0 379 1 lapB Lipopolysaccharide assembly protein B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB60 0.0 564 70 0 379 1 lapB Lipopolysaccharide assembly protein B Escherichia coli O157:H7
P44130 1.01e-123 365 47 2 391 3 lapB Lipopolysaccharide assembly protein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9ZD72 0.001 44 26 1 123 4 RP472 Uncharacterized protein RP472 Rickettsia prowazekii (strain Madrid E)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_05080
Feature type CDS
Gene lapB
Product lipopolysaccharide assembly protein LapB
Location 21246 - 22415 (strand: -1)
Length 1170 (nucleotides) / 389 (amino acids)
In genomic island -

Contig

Accession contig_5
Length 181448 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1002
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13176 Tetratricopeptide repeat
PF18073 Rubredoxin metal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2956 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19804 lipopolysaccharide assembly protein B - -

Protein Sequence

MLELLFLLLPIAAAYGWYMGRRSAQQNQQQHADRLSRDYVAGVNFLLSDQQDKAVDLFLDMLKEDSSAFEAHLTLGNLFRSRGEVERAIRIHQSLMESASLSYDQRLLATQQLGRDYVAAGVYDRAEVLFLQLIDEADFRQSALQSLLSIYQSTSDWGKAIDIGEKLLKQGDTGQRENIANFYCELALQALGSDNTDGAFAYLAKAAGADKNCARVSIMQGRIHIERAEYSKAVTVLKRVFEQDKEMVSETLPMLETCYTHLDQPAEWAEYLLHCSDENIGAIAELYLADIIEQQEGPEMAITYVNRQLQRHPTMRLFCRLMEYYLSEAEEGRAKESLGLLRNMVGEQIRTKPDYRCGKCGFTSHALYWHCPSCRSWDTIKPIRGLDGQ

Flanking regions ( +/- flanking 50bp)

CAGTCTTCCGCTTCGGTTGCACTGCGGGACACCACTAAGGAATAAGCATTATGCTTGAGCTGTTGTTTCTTCTGTTGCCCATTGCTGCCGCATACGGCTGGTATATGGGGCGGCGCAGCGCGCAGCAGAATCAACAACAACATGCTGACCGCCTGTCACGCGACTATGTGGCAGGCGTAAACTTTTTGCTGTCCGATCAGCAGGATAAAGCGGTTGATTTGTTCCTCGACATGCTGAAAGAAGACAGCTCTGCATTTGAAGCTCACCTGACACTCGGCAACCTGTTCCGTTCGCGCGGCGAAGTGGAACGTGCCATCCGCATCCATCAGTCGCTGATGGAAAGCGCCTCTCTCTCCTATGACCAGCGTCTCCTCGCCACACAACAGCTGGGCCGCGATTATGTGGCCGCCGGGGTCTATGACCGGGCGGAAGTCCTGTTTTTACAGCTGATTGATGAGGCGGATTTCAGACAAAGCGCGCTTCAGTCGCTGTTATCGATTTATCAGTCCACCAGTGACTGGGGCAAAGCCATCGATATCGGAGAAAAACTGCTGAAACAGGGTGATACCGGGCAGCGGGAGAATATCGCTAACTTCTATTGTGAACTGGCATTGCAGGCACTGGGCAGCGATAACACTGACGGGGCATTTGCGTATCTCGCCAAAGCTGCGGGGGCGGATAAAAACTGTGCCCGGGTGTCGATTATGCAGGGGCGTATTCATATTGAACGGGCGGAATACAGCAAAGCCGTCACCGTGCTCAAGCGGGTATTTGAGCAGGATAAAGAGATGGTCAGTGAAACGCTGCCGATGCTGGAAACCTGCTATACACACCTTGATCAGCCGGCAGAATGGGCAGAATACCTGCTGCACTGCTCGGATGAAAATATTGGTGCTATTGCCGAACTCTATCTTGCGGATATTATTGAACAGCAGGAAGGGCCGGAAATGGCGATCACCTATGTTAACCGCCAGTTGCAGCGCCATCCGACCATGCGTCTGTTCTGCCGTCTGATGGAATATTATCTGTCAGAGGCGGAGGAAGGGCGTGCCAAAGAGAGTCTCGGCCTGCTGCGTAACATGGTCGGCGAACAAATTCGGACAAAACCGGATTACCGCTGCGGCAAATGCGGATTTACATCACACGCCCTGTACTGGCACTGCCCGTCCTGCCGGTCATGGGATACTATCAAGCCTATCAGAGGGCTGGACGGACAGTGACAACGTCACATTTATCCGTAATTATTTACCCGTATTAATTCACCAACCAC