Homologs in group_312

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09290 FBDBKF_09290 100.0 Morganella morganii S1 tadD Flp pilus assembly protein TadD, contains TPR repeats
EHELCC_10120 EHELCC_10120 100.0 Morganella morganii S2 tadD Flp pilus assembly protein TadD, contains TPR repeats
NLDBIP_10465 NLDBIP_10465 100.0 Morganella morganii S4 tadD Flp pilus assembly protein TadD, contains TPR repeats
LHKJJB_10890 LHKJJB_10890 100.0 Morganella morganii S3 tadD Flp pilus assembly protein TadD, contains TPR repeats
F4V73_RS08290 F4V73_RS08290 28.8 Morganella psychrotolerans - SycD/LcrH family type III secretion system chaperone
F4V73_RS10675 F4V73_RS10675 58.4 Morganella psychrotolerans - tetratricopeptide repeat protein
PMI_RS13225 PMI_RS13225 43.8 Proteus mirabilis HI4320 sicA type III secretion system translocator chaperone SicA

Distribution of the homologs in the orthogroup group_312

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_312

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A2U4 1.98e-22 90 38 0 114 1 ipgC Chaperone protein IpgC Shigella flexneri
P0A2U5 1.98e-22 90 38 0 114 3 ipgC Chaperone protein IpgC Shigella dysenteriae
P69066 1.21e-19 83 36 0 115 1 sicA Chaperone protein SicA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69065 1.21e-19 83 36 0 115 3 sicA Chaperone protein SicA Salmonella typhi
P69064 1.21e-19 83 36 0 115 3 sicA Chaperone protein SicA Salmonella dublin
Q46787 4.35e-13 66 34 1 113 3 ygeG Uncharacterized protein YgeG Escherichia coli (strain K12)
P21207 1.83e-11 62 30 1 137 3 lcrH Low calcium response locus protein H Yersinia pestis
P23995 2.56e-11 61 30 1 137 3 lcrH Low calcium response locus protein H Yersinia pseudotuberculosis serotype I (strain IP32953)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_13950
Feature type CDS
Gene tadD
Product Flp pilus assembly protein TadD, contains TPR repeats
Location 91571 - 92035 (strand: -1)
Length 465 (nucleotides) / 154 (amino acids)

Contig

Accession ZDB_692
Length 124746 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_312
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF07720 Tetratricopeptide repeat
PF13181 Tetratricopeptide repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2956 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain

Protein Sequence

MDDNTDFDIKSLIGNIFSHLESGNISDLLMPKNNEDFSDVYSLACDYYDKGLIEQAENIFRSLCLYDFSNVDYLLGLAAVKQVQKQYQKAINLYSLAINLDENNASIYLYAGQCYLYTGEKESAISSFNHCLSLACNDNEREQAIHYISMLEGG

Flanking regions ( +/- flanking 50bp)

AGATAGTATTGCCTGACTTGATAATCCAATATTATTAAGGGGTTTTTGTTATGGATGACAATACAGATTTTGATATTAAATCTCTGATCGGGAATATTTTTTCTCATCTGGAAAGTGGAAACATTTCTGATCTTCTGATGCCAAAGAATAATGAGGATTTTTCGGATGTTTATTCTCTGGCGTGTGATTATTATGATAAAGGGCTTATAGAACAAGCTGAGAATATTTTTCGTTCACTCTGTTTATATGACTTTAGCAATGTGGATTATTTACTTGGATTAGCTGCAGTTAAACAGGTGCAAAAACAATATCAGAAAGCGATTAATCTTTATAGTTTAGCTATTAATTTAGATGAAAACAATGCATCGATATATTTGTATGCAGGACAATGCTATTTATACACAGGTGAGAAAGAATCAGCGATAAGCAGCTTCAATCATTGCCTTTCATTAGCGTGTAATGATAATGAGCGGGAACAAGCAATACATTATATATCAATGCTGGAAGGTGGATGATGCGTTTGGAAAATTGGTTGAAAACAAATAAAGAAGTTGATGATCTCAGT