COG2944


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2944, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator YiaG, XRE-type HTH domain
Function(s) descr. Transcription (K)

Occurence in the database

COG2944 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3813 F4V73_RS02145 458174 458494 1 helix-turn-helix domain-containing protein Morganella psychrotolerans
1 group_3734 F4V73_RS15325 49919 50224 -1 nadS NadS family protein Morganella psychrotolerans
2 group_3734 PMI_RS02725 593267 593551 1 nadS NadS family protein Proteus mirabilis HI4320
3 group_3813 PMI_RS14120 3135724 3136044 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
4 group_3734 PMI_RS15830 3515773 3516084 1 type II toxin-antitoxin system MqsA family antitoxin Proteus mirabilis HI4320
5 group_4775 PMI_RS18715 33397 33627 -1 transcriptional regulator Proteus mirabilis HI4320