Homologs in group_3734

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS15325 F4V73_RS15325 44.7 Morganella psychrotolerans nadS NadS family protein
PMI_RS15830 PMI_RS15830 35.5 Proteus mirabilis HI4320 - type II toxin-antitoxin system MqsA family antitoxin

Distribution of the homologs in the orthogroup group_3734

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3734

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9V5 1.3e-05 43 30 2 89 4 yiaG Uncharacterized HTH-type transcriptional regulator YiaG Escherichia coli (strain K12)
P0A9V6 1.3e-05 43 30 2 89 4 yiaG Uncharacterized HTH-type transcriptional regulator YiaG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9V7 1.3e-05 43 30 2 89 4 yiaG Uncharacterized HTH-type transcriptional regulator YiaG Escherichia coli O157:H7
Q9KMA5 2.13e-05 42 32 0 61 1 higA-2 Antitoxin HigA-2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02725
Feature type CDS
Gene nadS
Product NadS family protein
Location 593267 - 593551 (strand: 1)
Length 285 (nucleotides) / 94 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3734
Orthogroup size 3
N. genomes 2

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2944 Transcription (K) K DNA-binding transcriptional regulator YiaG, XRE-type HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07726 putative transcriptional regulator - -

Protein Sequence

MSFFNDLKASLEEAVEIKNGDKKASKVTRFEVADVKAIREQLNVSQSEFAHALGTSIDTVKSWELKRRNPTGLTAKVLIAIHKNPNLFKELANI

Flanking regions ( +/- flanking 50bp)

AAAGATTGAGTTAAAAAAACTAACAAAAAAACTTAAAGGTGAACGGTGATATGAGTTTCTTCAATGATCTAAAAGCCTCTTTAGAAGAAGCCGTAGAAATTAAAAATGGCGATAAAAAAGCATCGAAAGTGACTCGGTTTGAAGTTGCTGATGTAAAAGCGATTAGGGAGCAACTTAACGTTTCACAAAGTGAATTTGCACATGCATTAGGGACAAGTATCGATACTGTAAAAAGTTGGGAATTAAAAAGACGTAATCCGACAGGGCTTACAGCGAAAGTACTTATTGCTATTCATAAAAACCCTAATTTATTTAAAGAGTTAGCCAATATCTAATTTCTTGTTTACTGCTAAACTTATTTTGTTTAGCAGTAAATCTCACTCTC