COG2932
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2932, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 17 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains |
Function(s) descr. |
Mobilome: prophages, transposons (X) |
Occurence in the database
COG2932 is associated with 17 different proteins (see tab "Protein list" and "Profile") |
The 17 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_428 |
FBDBKF_00255 |
37326 |
38012 |
1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S1 |
1 |
group_1662 |
FBDBKF_11240 |
64044 |
64571 |
-1 |
|
HTH cro/C1-type domain-containing protein |
Morganella morganii S1 |
2 |
group_1662 |
FBDBKF_12900 |
83078 |
83443 |
1 |
|
Uncharacterized HTH-type transcriptional regulator HI_1476 |
Morganella morganii S1 |
3 |
group_428 |
EHELCC_01290 |
270856 |
271542 |
-1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S2 |
4 |
group_1662 |
EHELCC_17975 |
36144 |
36671 |
1 |
|
HTH cro/C1-type domain-containing protein |
Morganella morganii S2 |
5 |
group_3713 |
EHELCC_19175 |
7485 |
8168 |
1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S2 |
6 |
group_428 |
NLDBIP_02170 |
408594 |
409280 |
1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S4 |
7 |
group_1662 |
NLDBIP_05305 |
35970 |
36497 |
1 |
|
HTH cro/C1-type domain-containing protein |
Morganella morganii S4 |
8 |
group_3713 |
NLDBIP_19145 |
13424 |
14107 |
1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S4 |
9 |
group_1662 |
LHKJJB_02185 |
13494 |
14021 |
1 |
|
HTH cro/C1-type domain-containing protein |
Morganella morganii S3 |
10 |
group_428 |
LHKJJB_03685 |
15835 |
16521 |
1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S3 |
11 |
group_3713 |
LHKJJB_19035 |
13424 |
14107 |
1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S3 |
12 |
group_428 |
HKOGLL_03360 |
271061 |
271747 |
-1 |
|
Helix-turn-helix transcriptional regulator |
Morganella morganii S5 |
13 |
group_1662 |
HKOGLL_15565 |
36934 |
37461 |
1 |
|
HTH cro/C1-type domain-containing protein |
Morganella morganii S5 |
14 |
group_1662 |
PMI_RS02380 |
536627 |
537319 |
-1 |
|
S24 family peptidase |
Proteus mirabilis HI4320 |
15 |
group_428 |
PMI_RS07475 |
1630328 |
1631020 |
1 |
|
helix-turn-helix transcriptional regulator |
Proteus mirabilis HI4320 |
16 |
group_428 |
PMI_RS08455 |
1842039 |
1842776 |
1 |
|
S24 family peptidase |
Proteus mirabilis HI4320 |