COG2932


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2932, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 17 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains
Function(s) descr. Mobilome: prophages, transposons (X)

Occurence in the database

COG2932 is associated with 17 different proteins (see tab "Protein list" and "Profile")
The 17 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_428 FBDBKF_00255 37326 38012 1 Helix-turn-helix transcriptional regulator Morganella morganii S1
1 group_1662 FBDBKF_11240 64044 64571 -1 HTH cro/C1-type domain-containing protein Morganella morganii S1
2 group_1662 FBDBKF_12900 83078 83443 1 Uncharacterized HTH-type transcriptional regulator HI_1476 Morganella morganii S1
3 group_428 EHELCC_01290 270856 271542 -1 Helix-turn-helix transcriptional regulator Morganella morganii S2
4 group_1662 EHELCC_17975 36144 36671 1 HTH cro/C1-type domain-containing protein Morganella morganii S2
5 group_3713 EHELCC_19175 7485 8168 1 Helix-turn-helix transcriptional regulator Morganella morganii S2
6 group_428 NLDBIP_02170 408594 409280 1 Helix-turn-helix transcriptional regulator Morganella morganii S4
7 group_1662 NLDBIP_05305 35970 36497 1 HTH cro/C1-type domain-containing protein Morganella morganii S4
8 group_3713 NLDBIP_19145 13424 14107 1 Helix-turn-helix transcriptional regulator Morganella morganii S4
9 group_1662 LHKJJB_02185 13494 14021 1 HTH cro/C1-type domain-containing protein Morganella morganii S3
10 group_428 LHKJJB_03685 15835 16521 1 Helix-turn-helix transcriptional regulator Morganella morganii S3
11 group_3713 LHKJJB_19035 13424 14107 1 Helix-turn-helix transcriptional regulator Morganella morganii S3
12 group_428 HKOGLL_03360 271061 271747 -1 Helix-turn-helix transcriptional regulator Morganella morganii S5
13 group_1662 HKOGLL_15565 36934 37461 1 HTH cro/C1-type domain-containing protein Morganella morganii S5
14 group_1662 PMI_RS02380 536627 537319 -1 S24 family peptidase Proteus mirabilis HI4320
15 group_428 PMI_RS07475 1630328 1631020 1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320
16 group_428 PMI_RS08455 1842039 1842776 1 S24 family peptidase Proteus mirabilis HI4320