Orthogroup:group_1704


Homologs in group_1704

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_11880 FBDBKF_11880 Morganella morganii S1 polA DNA polymerase I
EHELCC_14425 EHELCC_14425 Morganella morganii S2 polA DNA polymerase I
NLDBIP_15520 NLDBIP_15520 Morganella morganii S4 polA DNA polymerase I
LHKJJB_15090 LHKJJB_15090 Morganella morganii S3 polA DNA polymerase I
HKOGLL_14210 HKOGLL_14210 Morganella morganii S5 polA DNA polymerase I
F4V73_RS14775 F4V73_RS14775 Morganella psychrotolerans polA DNA polymerase I
PMI_RS13960 PMI_RS13960 Proteus mirabilis HI4320 polA DNA polymerase I

Distribution of group_1704 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1704 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1704

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1704.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 polA 7

Product

# Product Occurence
1 DNA polymerase I 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0749 7 L Replication, recombination and repair (L) DNA polymerase I, 3'-5' exonuclease and polymerase domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02335 7 DNA polymerase I [EC:2.7.7.7] DNA replication
Base excision repair
Nucleotide excision repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00476 7 DNA polymerase family A
PF01367 7 5'-3' exonuclease, C-terminal SAM fold
PF01612 7 3'-5' exonuclease
PF02739 7 5'-3' exonuclease, N-terminal resolvase-like domain

Annotations of the 172 SwissProt hits

Annotation Number of occurrences
5'-3' exonuclease 13
DNA polymerase 5
DNA polymerase DpoZ 3
DNA polymerase I 31
DNA polymerase I A, chloroplastic 1
DNA polymerase I A, chloroplastic/mitochondrial 1
DNA polymerase I B, chloroplastic/mitochondrial 1
DNA polymerase I B, mitochondrial 1
DNA polymerase I, thermostable 5
DNA polymerase nu 2
DNA polymerase theta 4
DNA-directed DNA polymerase 4
Flap endonuclease 1
Flap endonuclease 1 3
Flap endonuclease Xni 94
Helicase and polymerase-containing protein TEBICHI 1
Probable DNA polymerase 1
Putative endonuclease L386 1

Protein length

Min length 930
Max length 932
Mean length (sd) 930.6 (1.0)
Median length 930.0

Protein length distribution