Homologs in group_3713
2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.
| Locus tag | Identity | Source | Gene | Product | |
|---|---|---|---|---|---|
| NLDBIP_19145 | NLDBIP_19145 | 100.0 | Morganella morganii S4 | - | Helix-turn-helix transcriptional regulator |
| LHKJJB_19035 | LHKJJB_19035 | 100.0 | Morganella morganii S3 | - | Helix-turn-helix transcriptional regulator |
Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).
| Swissprot accession | Eval | Score | ID (%) | N gaps | Alignment length | Annot score | Gene | Description | Organism |
|---|---|---|---|---|---|---|---|---|---|
| Q06553 | 1.97e-38 | 136 | 38 | 6 | 236 | 2 | prtR | HTH-type transcriptional regulator PrtR | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) |
| Q47587 | 4.46e-28 | 109 | 33 | 9 | 246 | 4 | rdgA | HTH-type transcriptional regulator RdgA | Pectobacterium carotovorum subsp. carotovorum |
| Q37906 | 2.09e-19 | 86 | 31 | 7 | 228 | 4 | CI | Repressor protein CI | Pseudomonas phage D3 |
| P14819 | 3.69e-19 | 85 | 30 | 7 | 237 | 1 | CI | Repressor protein CI | Enterobacteria phage phi80 |
| P16117 | 7.77e-15 | 70 | 50 | 0 | 72 | 1 | CI | Repressor protein CI (Fragment) | Enterobacteria phage 434 |
| P44207 | 3.93e-11 | 63 | 27 | 5 | 209 | 1 | HI_1476 | Uncharacterized HTH-type transcriptional regulator HI_1476 | Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) |
| P03036 | 1.43e-10 | 58 | 44 | 0 | 68 | 1 | CRO | Regulatory protein cro | Enterobacteria phage 434 |
| Q79S39 | 1.43e-06 | 50 | 40 | 0 | 62 | 4 | s087 | HTH-type transcriptional regulator for conjugative element SXT | Vibrio cholerae |
| Q8GJK1 | 1.43e-06 | 50 | 40 | 0 | 62 | 4 | None | HTH-type transcriptional regulator for conjugative element pMERPH | Shewanella putrefaciens |
| Q79RI9 | 1.43e-06 | 50 | 40 | 0 | 62 | 4 | ORF-96 | HTH-type transcriptional regulator for conjugative element R391 | Providencia rettgeri |
| O31943 | 2.09e-05 | 45 | 31 | 2 | 85 | 4 | yonR | SPbeta prophage-derived uncharacterized HTH-type transcriptional regulator YonR | Bacillus subtilis (strain 168) |
| Q6F9U5 | 0.000441 | 42 | 31 | 3 | 94 | 4 | cpiR | Competence pilus inhibition repressor | Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) |
| P18680 | 0.000874 | 42 | 25 | 5 | 190 | 4 | CI-HTT | 26 kDa repressor protein | Escherichia phage HK022 |
| Source | Morganella morganii S2 |
|---|---|
| Locus tag | EHELCC_19175 |
| Feature type | CDS |
| Gene | - |
| Product | Helix-turn-helix transcriptional regulator |
| Location | 7485 - 8168 (strand: 1) |
| Length | 684 (nucleotides) / 227 (amino acids) |
| Accession | ZDB_242 |
|---|---|
| Length | 16493 nucleotides |
| Topology | linear |
| Plasmid | False |
| Orthogroup | group_3713 | |
|---|---|---|
| Orthogroup size | 3 | |
| N. genomes | 3 |
MSIAKRLAEARIKAGLSQQELADIVGVSQQSIGKIEAGKTSSPRKIADMARALNVSVHWLQFGAQDENAKIVDLAIKDWDDVPDDPYEFVSIPILDIDLSAGCGANAEIIETEIGTYPFRREELNRYGVNAENARLVKIIGNSLYPVLNSGDMVAVDITNKRIKDGDLYAIRDGVLLRVKILVGLPDGGLIVRSFNSEEYPDEVLNYDHTRARIHVIGRVFWSSRRW
GGTTAAAACAAAAAGTTGTAATCTTAAAGGAGGTAAATAAGGGAGTTGTGATGAGCATTGCAAAACGACTCGCAGAAGCGAGGATTAAAGCAGGGTTAAGCCAGCAAGAATTGGCCGACATAGTTGGTGTATCGCAGCAATCTATCGGAAAGATTGAGGCGGGAAAAACTTCGTCACCAAGAAAAATAGCTGATATGGCCAGAGCGTTGAATGTATCCGTACACTGGTTACAATTTGGTGCTCAGGATGAAAACGCTAAAATTGTAGATCTGGCAATTAAAGATTGGGATGATGTTCCTGATGACCCATATGAATTTGTGAGTATTCCTATTTTGGATATAGATTTATCCGCCGGCTGCGGCGCCAATGCTGAAATTATAGAAACAGAGATAGGAACATACCCATTCCGCAGAGAAGAGCTAAATCGTTACGGAGTTAACGCTGAGAATGCTCGCCTAGTAAAAATAATAGGTAACAGCCTCTACCCAGTATTAAACAGCGGGGATATGGTTGCAGTTGATATCACAAATAAAAGGATAAAAGACGGCGACCTCTATGCCATCAGAGATGGGGTATTGCTTCGTGTTAAAATATTGGTTGGTTTGCCAGATGGCGGACTCATTGTCCGTAGCTTTAATTCAGAAGAATACCCTGATGAAGTGCTTAATTATGACCACACCAGGGCAAGAATACACGTTATAGGTAGGGTTTTTTGGTCATCAAGACGCTGGTAGTACGGTCATCAACTGATCTTCGGTGATAATTTTTATATCTGATATTCCGC
