Homologs in group_428

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00255 FBDBKF_00255 42.7 Morganella morganii S1 - Helix-turn-helix transcriptional regulator
EHELCC_01290 EHELCC_01290 42.7 Morganella morganii S2 - Helix-turn-helix transcriptional regulator
NLDBIP_02170 NLDBIP_02170 42.7 Morganella morganii S4 - Helix-turn-helix transcriptional regulator
LHKJJB_03685 LHKJJB_03685 42.7 Morganella morganii S3 - Helix-turn-helix transcriptional regulator
HKOGLL_03360 HKOGLL_03360 42.7 Morganella morganii S5 - Helix-turn-helix transcriptional regulator
PMI_RS07475 PMI_RS07475 46.0 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_428

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_428

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P14819 2.54e-39 139 37 5 233 1 CI Repressor protein CI Enterobacteria phage phi80
Q06553 1.05e-38 138 34 7 246 2 prtR HTH-type transcriptional regulator PrtR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q47587 1.04e-34 127 34 6 254 4 rdgA HTH-type transcriptional regulator RdgA Pectobacterium carotovorum subsp. carotovorum
P18680 1.03e-12 68 26 7 244 4 CI-HTT 26 kDa repressor protein Escherichia phage HK022
Q37906 2.41e-09 59 27 7 214 4 CI Repressor protein CI Pseudomonas phage D3
P44207 5.03e-06 49 24 6 217 1 HI_1476 Uncharacterized HTH-type transcriptional regulator HI_1476 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08455
Feature type CDS
Gene -
Product S24 family peptidase
Location 1842039 - 1842776 (strand: 1)
Length 738 (nucleotides) / 245 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_428
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF00717 Peptidase S24-like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2932 Mobilome: prophages, transposons (X) X Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains

Protein Sequence

MVKNDYKLAFTKRLQEACLDSGIAGRGLGKRITEALAKQGIKVSAPAVWKWLNGESVPDSTNILALSQWLDVRAEWLEYGRGAKKNDGISVNEIMPVNDWDNSTPIERDEVEIPFYSTIELAAGFGSCTTDNQKVELLRFSRSTFNQYGVQPSDAVAFKVHGDSMSPVIPDSSIVTISTGHTKIIDGGIYAIQQGDLLRVKILHRLPNNKIIIRSYNTIDYPDEESTLEEVKILGRVFNWSVMGW

Flanking regions ( +/- flanking 50bp)

ATGCTAGTATGTAACTAAAGTCACGTCAAGATAGAAAAGGAAATTAACTAGTGGTTAAAAATGACTATAAGTTAGCATTCACAAAAAGACTACAAGAAGCCTGCCTAGACTCCGGGATTGCGGGTAGAGGGTTAGGTAAAAGAATTACAGAGGCATTGGCTAAACAAGGAATAAAAGTCAGTGCGCCCGCGGTCTGGAAATGGTTAAATGGTGAATCCGTTCCTGACTCAACAAATATTTTAGCCTTAAGTCAGTGGCTCGATGTTCGAGCTGAATGGTTAGAATATGGCAGAGGCGCCAAGAAAAATGATGGCATTTCAGTTAATGAAATAATGCCTGTTAATGATTGGGATAATAGTACTCCTATAGAGCGAGATGAAGTGGAGATCCCATTTTATTCAACAATTGAATTGGCCGCAGGTTTTGGCAGTTGTACCACTGATAATCAAAAGGTGGAATTATTGAGATTCTCTCGTTCTACATTTAATCAATATGGTGTACAGCCAAGTGATGCTGTTGCTTTTAAAGTGCATGGCGATAGTATGTCACCAGTTATTCCTGACAGCTCTATTGTAACCATCAGTACAGGGCATACTAAGATTATTGATGGTGGTATTTACGCTATTCAGCAAGGTGACTTGTTAAGAGTTAAAATCTTGCACCGCCTACCCAATAATAAAATCATTATTCGTAGCTATAATACGATTGATTATCCTGATGAAGAATCAACCTTAGAAGAAGTAAAAATCTTAGGGCGTGTTTTTAATTGGTCGGTGATGGGCTGGTGATCGCTTTAGGAAAAGTGAATGAAAAAGTGAATAGTGCTAACACTAGGCTT