COG2205


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2205, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 17 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description K+-sensing histidine kinase KdpD
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2205 is associated with 17 different proteins (see tab "Protein list" and "Profile")
The 17 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_536 FBDBKF_01195 223095 224534 -1 baeS Signal transduction histidine kinase Morganella morganii S1
1 group_761 FBDBKF_03425 89117 91804 -1 kdpD two-component system sensor histidine kinase KdpD Morganella morganii S1
2 group_536 EHELCC_00350 84334 85773 1 baeS Signal transduction histidine kinase Morganella morganii S2
3 group_761 EHELCC_07110 155299 157986 1 kdpD two-component system sensor histidine kinase KdpD Morganella morganii S2
4 group_536 NLDBIP_03110 594363 595802 -1 baeS Signal transduction histidine kinase Morganella morganii S4
5 group_761 NLDBIP_07435 155172 157859 1 kdpD two-component system sensor histidine kinase KdpD Morganella morganii S4
6 group_536 LHKJJB_04625 201604 203043 -1 baeS Signal transduction histidine kinase Morganella morganii S3
7 group_761 LHKJJB_06970 118918 121605 1 kdpD two-component system sensor histidine kinase KdpD Morganella morganii S3
8 group_536 HKOGLL_02420 84539 85978 1 baeS Signal transduction histidine kinase Morganella morganii S5
9 group_761 HKOGLL_03960 111782 114469 -1 kdpD two-component system sensor histidine kinase KdpD Morganella morganii S5
10 group_432 F4V73_RS06355 1320008 1322722 1 rcsD phosphotransferase RcsD Morganella psychrotolerans
11 group_536 F4V73_RS07265 1511877 1513316 -1 HAMP domain-containing sensor histidine kinase Morganella psychrotolerans
12 group_407 F4V73_RS10185 147590 149086 -1 HAMP domain-containing sensor histidine kinase Morganella psychrotolerans
13 group_761 F4V73_RS11475 438323 441010 1 kdpD two-component system sensor histidine kinase KdpD Morganella psychrotolerans
14 group_761 PMI_RS05920 1299462 1302164 -1 kdpD two-component system sensor histidine kinase KdpD Proteus mirabilis HI4320
15 group_432 PMI_RS08485 1845004 1847697 1 rcsD phosphotransferase RcsD Proteus mirabilis HI4320
16 group_536 PMI_RS09250 2016236 2017684 -1 HAMP domain-containing sensor histidine kinase Proteus mirabilis HI4320