COG1961


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1961, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Site-specific DNA recombinase SpoIVCA/DNA invertase PinE
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG1961 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3460 FBDBKF_15675 69806 70432 -1 Transposon Tn552 DNA-invertase bin3 Morganella morganii S1
1 group_3462 FBDBKF_15695 74491 75105 1 spoIVCA Site-specific DNA recombinase SpoIVCA/DNA invertase PinE Morganella morganii S1
2 group_3779 FBDBKF_20235 4471 5028 -1 tnpR Transposon Tn1331 resolvase Morganella morganii S1
3 group_3635 FBDBKF_20570 2054 2695 -1 recombinase family protein Morganella morganii S1
4 group_3674 EHELCC_04280 184576 186255 1 recombinase family protein Morganella morganii S2
5 group_3635 EHELCC_04285 186268 186909 1 recombinase family protein Morganella morganii S2
6 group_3460 EHELCC_16030 69106 69732 -1 Transposon Tn552 DNA-invertase bin3 Morganella morganii S2
7 group_3462 EHELCC_16050 73791 74405 1 spoIVCA Site-specific DNA recombinase SpoIVCA/DNA invertase PinE Morganella morganii S2
8 group_3779 EHELCC_19600 4471 5028 -1 tnpR Transposon Tn1331 resolvase Morganella morganii S2
9 group_3674 NLDBIP_04280 184372 186051 1 recombinase family protein Morganella morganii S4
10 group_3635 NLDBIP_04285 186064 186705 1 recombinase family protein Morganella morganii S4
11 group_3462 NLDBIP_16315 6258 6872 -1 spoIVCA Site-specific DNA recombinase SpoIVCA/DNA invertase PinE Morganella morganii S4
12 group_3460 NLDBIP_16335 10931 11557 1 Transposon Tn552 DNA-invertase bin3 Morganella morganii S4
13 group_3674 LHKJJB_10110 184486 186165 1 recombinase family protein Morganella morganii S3
14 group_3635 LHKJJB_10115 186178 186819 1 recombinase family protein Morganella morganii S3
15 group_3460 LHKJJB_16465 69106 69732 -1 Transposon Tn552 DNA-invertase bin3 Morganella morganii S3
16 group_3462 LHKJJB_16485 73791 74405 1 spoIVCA Site-specific DNA recombinase SpoIVCA/DNA invertase PinE Morganella morganii S3
17 group_3635 HKOGLL_08860 4233 4874 -1 recombinase family protein Morganella morganii S5
18 group_3674 HKOGLL_08865 4887 6566 -1 recombinase family protein Morganella morganii S5
19 group_3460 HKOGLL_16235 69106 69732 -1 Transposon Tn552 DNA-invertase bin3 Morganella morganii S5
20 group_3462 HKOGLL_16255 73791 74405 1 spoIVCA Site-specific DNA recombinase SpoIVCA/DNA invertase PinE Morganella morganii S5