COG1925
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1925, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | HPr or related phosphotransfer protein |
---|---|
Function(s) descr. | Signal transduction mechanisms (T) Carbohydrate transport and metabolism (G) |
Occurence in the database
COG1925 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_739 | FBDBKF_03270 | 53910 | 54182 | 1 | npr | PTS phosphocarrier protein NPr | Morganella morganii S1 |
1 | group_339 | FBDBKF_11600 | 115851 | 116108 | -1 | ptsH | phosphocarrier protein Hpr | Morganella morganii S1 |
2 | group_739 | EHELCC_07265 | 192921 | 193193 | -1 | npr | PTS phosphocarrier protein NPr | Morganella morganii S2 |
3 | group_339 | EHELCC_17520 | 14194 | 14451 | -1 | ptsH | phosphocarrier protein Hpr | Morganella morganii S2 |
4 | group_739 | NLDBIP_07590 | 192794 | 193066 | -1 | npr | PTS phosphocarrier protein NPr | Morganella morganii S4 |
5 | group_339 | NLDBIP_18730 | 14941 | 15198 | -1 | ptsH | phosphocarrier protein Hpr | Morganella morganii S4 |
6 | group_739 | LHKJJB_07125 | 156540 | 156812 | -1 | npr | PTS phosphocarrier protein NPr | Morganella morganii S3 |
7 | group_339 | LHKJJB_17960 | 14194 | 14451 | -1 | ptsH | phosphocarrier protein Hpr | Morganella morganii S3 |
8 | group_739 | HKOGLL_03805 | 76575 | 76847 | 1 | npr | PTS phosphocarrier protein NPr | Morganella morganii S5 |
9 | group_339 | HKOGLL_18690 | 9780 | 10037 | 1 | ptsH | phosphocarrier protein Hpr | Morganella morganii S5 |
10 | group_339 | F4V73_RS08080 | 1678010 | 1678267 | 1 | ptsH | phosphocarrier protein Hpr | Morganella psychrotolerans |
11 | group_739 | F4V73_RS11650 | 482461 | 482733 | -1 | npr | PTS phosphocarrier protein NPr | Morganella psychrotolerans |
12 | group_339 | PMI_RS09020 | 1965759 | 1966016 | 1 | ptsH | phosphocarrier protein Hpr | Proteus mirabilis HI4320 |
13 | group_739 | PMI_RS18130 | 3983144 | 3983416 | -1 | npr | PTS phosphocarrier protein NPr | Proteus mirabilis HI4320 |