COG1925


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1925, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description HPr or related phosphotransfer protein
Function(s) descr. Signal transduction mechanisms (T)
Carbohydrate transport and metabolism (G)

Occurence in the database

COG1925 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_739 FBDBKF_03270 53910 54182 1 npr PTS phosphocarrier protein NPr Morganella morganii S1
1 group_339 FBDBKF_11600 115851 116108 -1 ptsH phosphocarrier protein Hpr Morganella morganii S1
2 group_739 EHELCC_07265 192921 193193 -1 npr PTS phosphocarrier protein NPr Morganella morganii S2
3 group_339 EHELCC_17520 14194 14451 -1 ptsH phosphocarrier protein Hpr Morganella morganii S2
4 group_739 NLDBIP_07590 192794 193066 -1 npr PTS phosphocarrier protein NPr Morganella morganii S4
5 group_339 NLDBIP_18730 14941 15198 -1 ptsH phosphocarrier protein Hpr Morganella morganii S4
6 group_739 LHKJJB_07125 156540 156812 -1 npr PTS phosphocarrier protein NPr Morganella morganii S3
7 group_339 LHKJJB_17960 14194 14451 -1 ptsH phosphocarrier protein Hpr Morganella morganii S3
8 group_739 HKOGLL_03805 76575 76847 1 npr PTS phosphocarrier protein NPr Morganella morganii S5
9 group_339 HKOGLL_18690 9780 10037 1 ptsH phosphocarrier protein Hpr Morganella morganii S5
10 group_339 F4V73_RS08080 1678010 1678267 1 ptsH phosphocarrier protein Hpr Morganella psychrotolerans
11 group_739 F4V73_RS11650 482461 482733 -1 npr PTS phosphocarrier protein NPr Morganella psychrotolerans
12 group_339 PMI_RS09020 1965759 1966016 1 ptsH phosphocarrier protein Hpr Proteus mirabilis HI4320
13 group_739 PMI_RS18130 3983144 3983416 -1 npr PTS phosphocarrier protein NPr Proteus mirabilis HI4320