COG1538


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1538, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 17 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane protein TolC
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1538 is associated with 17 different proteins (see tab "Protein list" and "Profile")
The 17 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_181 FBDBKF_06330 99891 101255 1 tolC outer membrane channel protein TolC Morganella morganii S1
1 group_303 FBDBKF_07995 131240 132583 1 tolC Outer membrane protein TolC Morganella morganii S1
2 group_181 EHELCC_09375 100463 101827 1 tolC outer membrane channel protein TolC Morganella morganii S2
3 group_303 EHELCC_13825 105434 106777 1 tolC Outer membrane protein TolC Morganella morganii S2
4 group_181 NLDBIP_09755 100463 101827 1 tolC outer membrane channel protein TolC Morganella morganii S4
5 group_303 NLDBIP_14270 126309 127652 1 tolC Outer membrane protein TolC Morganella morganii S4
6 group_181 LHKJJB_08000 115411 116775 -1 tolC outer membrane channel protein TolC Morganella morganii S3
7 group_303 LHKJJB_08580 32097 33440 -1 tolC Outer membrane protein TolC Morganella morganii S3
8 group_181 HKOGLL_07550 115411 116775 -1 tolC outer membrane channel protein TolC Morganella morganii S5
9 group_303 HKOGLL_08130 32097 33440 -1 tolC Outer membrane protein TolC Morganella morganii S5
10 group_303 F4V73_RS03920 830572 831954 1 Cu(I)/Ag(I) efflux RND transporter outer membrane protein Morganella psychrotolerans
11 group_181 F4V73_RS09460 1996258 1997901 -1 TolC family protein Morganella psychrotolerans
12 group_303 F4V73_RS12990 210472 211812 -1 TolC family outer membrane protein Morganella psychrotolerans
13 group_181 F4V73_RS15590 112830 114194 -1 tolC outer membrane channel protein TolC Morganella psychrotolerans
14 group_303 PMI_RS01340 324361 325713 -1 TolC family outer membrane protein Proteus mirabilis HI4320
15 group_181 PMI_RS06115 1341296 1342771 1 TolC family protein Proteus mirabilis HI4320
16 group_181 PMI_RS11620 2567373 2568770 1 tolC outer membrane channel protein TolC Proteus mirabilis HI4320