Orthogroup:group_260


Homologs in group_260

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06330 FBDBKF_06330 Morganella morganii S1 tolC outer membrane channel protein TolC
EHELCC_09375 EHELCC_09375 Morganella morganii S2 tolC outer membrane channel protein TolC
NLDBIP_09755 NLDBIP_09755 Morganella morganii S4 tolC outer membrane channel protein TolC
LHKJJB_08000 LHKJJB_08000 Morganella morganii S3 tolC outer membrane channel protein TolC
HKOGLL_07550 HKOGLL_07550 Morganella morganii S5 tolC outer membrane channel protein TolC
F4V73_RS09460 F4V73_RS09460 Morganella psychrotolerans - TolC family protein
F4V73_RS15590 F4V73_RS15590 Morganella psychrotolerans tolC outer membrane channel protein TolC
PMI_RS11620 PMI_RS11620 Proteus mirabilis HI4320 tolC outer membrane channel protein TolC

Distribution of group_260 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_260 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_260

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_260.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tolC 7
2 - 1

Product

# Product Occurence
1 outer membrane channel protein TolC 7
2 TolC family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1538 8 M Cell wall/membrane/envelope biogenesis (M) Outer membrane protein TolC

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02321 8 Outer membrane efflux protein

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG044140 7 outer membrane channel protein TolC VF1029 Nutritional/Metabolic factor

Annotations of the 7 SwissProt hits

Annotation Number of occurrences
Alkaline protease secretion protein AprF 1
Cobalt-zinc-cadmium resistance protein CzcC 1
Outer membrane efflux protein BepC 1
Outer membrane protein TolC 3
Proteases secretion protein PrtF 1

Protein length

Min length 454
Max length 547
Mean length (sd) 467.0 (32.6)
Median length 454.0

Protein length distribution