Homologs in group_260

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06330 FBDBKF_06330 24.6 Morganella morganii S1 tolC outer membrane channel protein TolC
EHELCC_09375 EHELCC_09375 24.6 Morganella morganii S2 tolC outer membrane channel protein TolC
NLDBIP_09755 NLDBIP_09755 24.6 Morganella morganii S4 tolC outer membrane channel protein TolC
LHKJJB_08000 LHKJJB_08000 24.6 Morganella morganii S3 tolC outer membrane channel protein TolC
HKOGLL_07550 HKOGLL_07550 24.6 Morganella morganii S5 tolC outer membrane channel protein TolC
F4V73_RS15590 F4V73_RS15590 24.7 Morganella psychrotolerans tolC outer membrane channel protein TolC
PMI_RS11620 PMI_RS11620 24.9 Proteus mirabilis HI4320 tolC outer membrane channel protein TolC

Distribution of the homologs in the orthogroup group_260

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_260

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q03027 2.65e-05 50 23 11 345 3 aprF Alkaline protease secretion protein AprF Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09460
Feature type CDS
Gene -
Product TolC family protein
Location 1996258 - 1997901 (strand: -1)
Length 1644 (nucleotides) / 547 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_260
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02321 Outer membrane efflux protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1538 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein TolC

Protein Sequence

MKVNWFVRNLSVVAIITGVCIHPVSAAVSFGAFGYKAAQEVEREPELTGDSGEEQRPVKTPPKITTLPEKPNRRAVSPARVVTAKQDDVPLVAPLVPLTGDPVASESEIIRQRSIMNNMPKSRPVNASATATVPAVAGQDSMPGGMTLQDAVIKSLDWDAGLSGLVNQYRAQLEAVYQKETEYYPQPGAGISRSLNNSDKGYVATASVSQLLYSFGKVSSQIDSLVARSDQSMLRVFVNADEVAEKTAMLYLDIKRYQEYIVLAEEQLGSVRHITDLARERTAAGAASRADLVQAEARLDTAQLQLNTLKLEHENQILNLNRMTGESVSLLSGQPIDSSLYSQQCYAQNIDFNAVPVVLVARAGLTIAQSDREVAKREAMPSIGLQGTYQQRFDAKDTDRYGREDHSVELTVNVPLSNFYTSNSKQRMAVYQENAANSEIRHTQNIVENNWRNQQIRLNELEERMKLLASRNLSLKDVTRLYQEQYVALGQRSIIDLLNADQEWHQSRRDYAAARYDYLATSISCSSQLGRFRESLQLSNESLRSLQ

Flanking regions ( +/- flanking 50bp)

TTTCATTTTTATGTATTCACCGGTATTCGTCAGCATAAAAGGTCTGAGCAGTGAAAGTAAATTGGTTTGTACGCAACCTTTCTGTGGTCGCCATTATTACCGGTGTTTGTATACATCCGGTTTCTGCGGCAGTCTCATTCGGCGCATTTGGTTATAAAGCAGCACAGGAAGTTGAACGGGAACCCGAACTGACCGGGGACAGCGGTGAAGAGCAGCGGCCGGTGAAAACACCCCCTAAAATAACCACCTTGCCGGAAAAACCGAATCGCCGGGCTGTTTCACCTGCCCGTGTGGTTACCGCGAAACAGGATGACGTACCGTTGGTGGCACCATTGGTTCCGCTGACAGGGGATCCGGTGGCATCGGAGAGCGAAATTATCCGCCAGCGATCCATTATGAATAATATGCCTAAGTCACGGCCGGTTAATGCCTCCGCTACCGCAACTGTTCCGGCTGTTGCCGGGCAGGACAGTATGCCCGGCGGGATGACATTGCAGGACGCCGTTATCAAATCGTTAGACTGGGATGCCGGTTTGTCCGGACTGGTTAACCAATACCGTGCTCAGTTGGAAGCGGTATATCAGAAAGAAACCGAATATTATCCGCAACCGGGGGCAGGGATTTCCCGCAGCCTGAATAACAGCGACAAAGGTTATGTGGCAACAGCGAGTGTCAGCCAGTTGCTCTATTCGTTCGGCAAAGTCTCATCACAGATAGATTCCTTAGTCGCACGCAGTGATCAGTCTATGCTGCGAGTGTTTGTAAATGCGGATGAAGTGGCAGAGAAAACGGCGATGCTGTATCTCGATATCAAACGCTATCAGGAATATATCGTGCTGGCAGAGGAACAACTGGGCTCAGTACGTCACATTACCGACCTTGCCCGTGAGCGGACCGCCGCAGGTGCTGCGTCCCGCGCTGATTTGGTTCAGGCGGAAGCCCGCCTGGATACCGCACAACTCCAGCTTAATACCCTGAAGCTTGAACATGAAAACCAGATCCTCAATCTGAACCGGATGACCGGTGAGTCCGTCAGCCTGTTATCAGGGCAGCCGATTGATTCATCTTTATATAGCCAGCAGTGCTATGCACAAAATATTGATTTTAATGCGGTTCCGGTGGTGTTGGTTGCCAGGGCAGGGCTGACTATCGCACAAAGTGACCGCGAAGTTGCCAAACGTGAAGCCATGCCAAGTATCGGATTACAGGGCACTTATCAGCAGCGTTTTGATGCAAAAGATACTGATCGTTACGGGCGCGAAGATCACAGTGTTGAGCTGACCGTTAATGTGCCGCTGTCGAATTTCTATACCAGTAATTCGAAGCAGCGCATGGCGGTCTATCAGGAAAATGCAGCCAATTCAGAAATTCGTCATACACAGAATATTGTTGAGAATAACTGGCGCAACCAGCAAATCCGGCTTAATGAACTGGAAGAACGGATGAAATTACTGGCTTCACGAAACCTCTCCCTCAAGGATGTCACCCGCCTGTATCAGGAGCAATACGTTGCTCTGGGTCAGCGCAGTATTATCGATTTGCTGAATGCGGATCAGGAATGGCATCAGTCACGGCGCGATTATGCGGCGGCAAGATATGATTACTTAGCAACCAGCATCAGTTGTTCCTCTCAGTTAGGGCGGTTCCGCGAAAGCTTACAATTATCCAATGAATCCCTACGGAGTCTCCAGTGATTTCAGAGCAACAACAGAGTGAATATAATGAAACGTGGTTGCAGGCGCTG