COG1187
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1187, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 |
Function(s) descr. |
Translation, ribosomal structure and biogenesis (J) |
Occurence in the database
COG1187 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_944 |
FBDBKF_05140 |
35508 |
36440 |
-1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Morganella morganii S1 |
1 |
group_1938 |
FBDBKF_14550 |
5024 |
5713 |
1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Morganella morganii S1 |
2 |
group_1985 |
FBDBKF_14885 |
77501 |
78196 |
-1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Morganella morganii S1 |
3 |
group_2183 |
FBDBKF_16440 |
11662 |
12558 |
1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Morganella morganii S1 |
4 |
group_2183 |
EHELCC_08305 |
128648 |
129544 |
1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Morganella morganii S2 |
5 |
group_944 |
EHELCC_12450 |
145054 |
145986 |
1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Morganella morganii S2 |
6 |
group_1938 |
EHELCC_15355 |
35100 |
35789 |
1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Morganella morganii S2 |
7 |
group_1985 |
EHELCC_15690 |
107577 |
108272 |
-1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Morganella morganii S2 |
8 |
group_2183 |
NLDBIP_08630 |
128648 |
129544 |
1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Morganella morganii S4 |
9 |
group_944 |
NLDBIP_12790 |
145009 |
145941 |
1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Morganella morganii S4 |
10 |
group_1938 |
NLDBIP_15885 |
35100 |
35789 |
1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Morganella morganii S4 |
11 |
group_1985 |
NLDBIP_16220 |
107577 |
108272 |
-1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Morganella morganii S4 |
12 |
group_2183 |
LHKJJB_05635 |
127615 |
128511 |
-1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Morganella morganii S3 |
13 |
group_944 |
LHKJJB_12650 |
145054 |
145986 |
1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Morganella morganii S3 |
14 |
group_1985 |
LHKJJB_15620 |
8414 |
9109 |
1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Morganella morganii S3 |
15 |
group_1938 |
LHKJJB_15955 |
80897 |
81586 |
-1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Morganella morganii S3 |
16 |
group_2183 |
HKOGLL_05280 |
113239 |
114135 |
1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Morganella morganii S5 |
17 |
group_944 |
HKOGLL_11265 |
145054 |
145986 |
1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Morganella morganii S5 |
18 |
group_1985 |
HKOGLL_14740 |
7626 |
8321 |
1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Morganella morganii S5 |
19 |
group_1938 |
HKOGLL_15075 |
80109 |
80798 |
-1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Morganella morganii S5 |
20 |
group_2183 |
F4V73_RS02960 |
627171 |
628064 |
1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Morganella psychrotolerans |
21 |
group_944 |
F4V73_RS05595 |
1190611 |
1191543 |
-1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Morganella psychrotolerans |
22 |
group_1938 |
F4V73_RS07345 |
1533302 |
1533943 |
1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Morganella psychrotolerans |
23 |
group_1985 |
F4V73_RS07685 |
1607075 |
1607770 |
-1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Morganella psychrotolerans |
24 |
group_1985 |
PMI_RS04065 |
910579 |
911283 |
1 |
rsuA |
16S rRNA pseudouridine(516) synthase RsuA |
Proteus mirabilis HI4320 |
25 |
group_1938 |
PMI_RS04375 |
982207 |
982836 |
-1 |
rluE |
23S rRNA pseudouridine(2457) synthase RluE |
Proteus mirabilis HI4320 |
26 |
group_944 |
PMI_RS06465 |
1418468 |
1419394 |
-1 |
rluB |
23S rRNA pseudouridine(2605) synthase RluB |
Proteus mirabilis HI4320 |
27 |
group_2183 |
PMI_RS14195 |
3151719 |
3152597 |
-1 |
rluF |
23S rRNA pseudouridine(2604) synthase RluF |
Proteus mirabilis HI4320 |